Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte13g01130 | ATGAACGATCTTTTAACGGAATCATTTGAGATCCCTCGCCATCAAGGCGCTGGAGGTGGAGGAGGTGGAGACATCGAGTCTGGAGCATATGCTATGACCTCAGGGGAACTAGGAATGGAGAACTTCTTTAAGAAGATACAAGAGATTGACAAACAATATGAAAAGCTGGAAAAGCTATTAAGAAAGCTTCAGAATGCTCATGAGGAGTCCAAGGCTGTAACAAAGGCTCCAGCAATGAAGTCCATCAAGCAACGAATGGAGAAAGATGTTGATGAAGTAAAGAAAATTGCACATTTTATAAAGTCAAAGATTGAGGAACTGGATAAAGAAAATTTGGCAAATAGGCAGAAGCCTGGTTGTGGAAAAGGAACTGCAGTAGACCGCTCTAGAACGGCCACAACTACATCTTTGAAAAAGAAATTGAAGGACAAGATGGCTGAATTCCAGACCCTGAGGGAAAATATTCATCAAGAATACCGTGAGGTGGTTGAGAGGCGTGTCTTTACAGTAACGGGTGCAAGAGCTGATGAGGAGACAATTGACAGATTGATCGAGACTGGAGACAGTGAACAGATTTTCCAAAAGGCTATTCAAGAACAAGGGCGAGGCCAGATAGTGGAAACCCTGGCAGAGATTCAGGAACGCCATGACGCTGTTAGAGACTTGGAGAGAAAGCTTCTTGATTTACAGCAGATATATCTGGATATGGCAGTACTGGTTGATGCACAAGGGGAAATACTCGACAATATAGAGTCACAGGTTTCAAGTGCAGTAGATCATGTACAGCAAGGGAACACTGCTCTACAGAGGGCCAAGTCACTACAGAAAAATTCCAGAAAATGGATGTGCATTGCAATTATCATACTTCTTATCATCGTTGCCATTATTGTGGTAGCCGTTGTCAAACCCTGGGTTAGCAAAAATGGGTCTTAG | 933 | 0.4298 | MNDLLTESFEIPRHQGAGGGGGGDIESGAYAMTSGELGMENFFKKIQEIDKQYEKLEKLLRKLQNAHEESKAVTKAPAMKSIKQRMEKDVDEVKKIAHFIKSKIEELDKENLANRQKPGCGKGTAVDRSRTATTTSLKKKLKDKMAEFQTLRENIHQEYREVVERRVFTVTGARADEETIDRLIETGDSEQIFQKAIQEQGRGQIVETLAEIQERHDAVRDLERKLLDLQQIYLDMAVLVDAQGEILDNIESQVSSAVDHVQQGNTALQRAKSLQKNSRKWMCIAIIILLIIVAIIVVAVVKPWVSKNGS* | 311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte13g01130 | 310 | SUPERFAMILY | t-snare proteins | 38 | 264 | IPR010989 | GO:0016020|GO:0016192 | |
| Pte13g01130 | 310 | CDD | SynN | 39 | 196 | IPR006011 | GO:0016020 | |
| Pte13g01130 | 310 | Gene3D | - | 202 | 303 | - | - | |
| Pte13g01130 | 310 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Pte13g01130 | 310 | FunFam | Syntaxin 132 | 34 | 163 | - | - | |
| Pte13g01130 | 310 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 209 | 271 | IPR000727 | - | |
| Pte13g01130 | 310 | MobiDBLite | consensus disorder prediction | 114 | 134 | - | - | |
| Pte13g01130 | 310 | SMART | tSNARE_6 | 204 | 271 | IPR000727 | - | |
| Pte13g01130 | 310 | Coils | Coil | 39 | 76 | - | - | |
| Pte13g01130 | 310 | Pfam | Syntaxin | 41 | 244 | IPR006011 | GO:0016020 | |
| Pte13g01130 | 310 | SMART | SynN_4 | 34 | 160 | IPR006011 | GO:0016020 | |
| Pte13g01130 | 310 | PANTHER | SYNTAXIN | 42 | 290 | IPR045242 | - | |
| Pte13g01130 | 310 | FunFam | Syntaxin 132 | 202 | 302 | - | - | |
| Pte13g01130 | 310 | Pfam | SNARE domain | 245 | 297 | IPR000727 | - | |
| Pte13g01130 | 310 | Coils | Coil | 90 | 110 | - | - | |
| Pte13g01130 | 310 | CDD | SNARE_syntaxin1-like | 208 | 270 | - | - | |
| Pte13g01130 | 310 | Coils | Coil | 138 | 158 | - | - | |
| Pte13g01130 | 310 | Gene3D | - | 36 | 163 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte13g01130 | Pte-Chr13 | 12002614 | 12008069 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte13g01130 | 1 | 311 | SNARE and Associated Proteins | AT3G03800 | 74.277 | 1.01e-160 | 448 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte13g01130 | K08486 | - | gmx:100306329 | 466.463 |