Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01128 ATGGAAATTCAATTCCAGCAACCTAAGCATCACAGGAGAGTCATTCCAACAGGCAAAGCTGGTGGGAAATTCAAAGGGAAAAGTAAAAGCAACACTGCAAACAAGTTTGTGGGTGTGAGGCAAAGGCCTTCAGGCAGATGGGTAGCTGAAATTAAGGATACAACTCAGAAAATAAGGATGTGGCTTGGAACATTTGAGACAGCAGAGGAGGCAGCTAGAGCTTATGATGAAGCTGCCTGTCTTCTTCGTGGAGCTAATACTCGTACCAACTTCATAACTCAGGTCTCATTAGATTCCCCTCTTGCTTCCAGAATAAGAAATATCCTTAACAGCAGAAAAGGATTCAAACAGGATGAATATGATGGTAGTCATATTCCTTCCCCAAAAGCCAGTGATACCAGTAATAGTCCTGGTAATAGTAATAGCGCCAATAGTAGTTCTAGTTGCAGCAGTAACGAGAACTCCCATCCTAGTGGCATGACCAAAGATATACAGTTGTTTGATGATGCTTATAGGCCAGATTTGAGCAACTGCAGTGAAGAATTAGAGTCTGGTACTGCTTCCAAGTCCAATATTTCATGGGGTTTTAGTGATGTAATGGATCTGCCAAAAAATGTTGACTTGCCTAATGCTGCTGAGCGGCTGGAGTTCACTGAGTTTGAAAGGATGAAAGTTGAAAGGCAAATTTCAGCTTCGCTCTATGCAATGAATGGCGTGCAAGAGTGCATGGCAGTTCAGGATTGCTCTGAAGATTTCTGGGATCTTCAACCTTTATGTCCACTGTTCTCCTGA 792 0.4268 MEIQFQQPKHHRRVIPTGKAGGKFKGKSKSNTANKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGANTRTNFITQVSLDSPLASRIRNILNSRKGFKQDEYDGSHIPSPKASDTSNSPGNSNSANSSSSCSSNENSHPSGMTKDIQLFDDAYRPDLSNCSEELESGTASKSNISWGFSDVMDLPKNVDLPNAAERLEFTEFERMKVERQISASLYAMNGVQECMAVQDCSEDFWDLQPLCPLFS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01128 263 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Pte13g01128 263 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Pte13g01128 263 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 230 - -
Pte13g01128 263 FunFam ethylene-responsive transcription factor RAP2-11 34 93 - -
Pte13g01128 263 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Pte13g01128 263 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Pte13g01128 263 MobiDBLite consensus disorder prediction 127 161 - -
Pte13g01128 263 CDD AP2 35 91 IPR001471 GO:0003700|GO:0006355
Pte13g01128 263 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Pte13g01128 263 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Pte13g01128 263 Gene3D AP2/ERF domain 34 94 IPR036955 GO:0003700|GO:0006355
Pte13g01128 263 MobiDBLite consensus disorder prediction 116 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01128 Pte-Chr13 11945623 11946854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01128 23 262 AP2-EREBP Transcription Factor Family AT5G19790 43.307 2.27e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte13g01128 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01128 K09286 - qsa:O6P43_009860 300.441