Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte13g01110 | ATGGAGGATGCTACAATGGGTCAGTACTGGTGCTACATGTGCTCCCGGTTGGTGAATCCCATTAGAGAAGTTCAGAACAAATGCCCATTTTGTGAAACAGAGTTTGTGGAAGAAGTGAGTGACCAAGGAATCCCCAGTGACAACCTGGATTCAAGATTTAACCGTGCCCTCTCTCAGTTTGCTCCACTCTTTCTTGGTTTGATGGAAGGTTTAAATCTTCCTCCTGCACTCATGACAACTCCAGAATTTGCAAGCAATAGTGCCTCTCCAGAAGAGGAAGAGACAGAACAAGAAAGGGAACAGGAAGTAGCATTTAGTAGTAGGAGAAGAAACTCAATCTCTGTGATTAGCTTTTTTCATCAGCATCCACATGTAAGGATGACTTCTGACAGTAATGAAAATGATCATAGTAGAATTGTAGTCTTTGACAACAATGGAGAGGAGGTCTTTGTGCTTAGAGGTTCTTTTGACTTGAACCAAACACAACATCCAACCCAAAATTCAGTTCCCTCTTTAGGAGGTTTGCCAGTAGGACAAAGTTTCAATGTCCTGCTGCAGCGTTTGCTAGATAATGACCCCAACAGATATGGAACACCTCCAACACAGAAAGCAGCCATTAAAGCGATGCCTAGAGTGATTATCGAGGATCAATCACGGTGCAGTATATGTTTGGAGGATCTTGAAATTGGTGCTGAAGCTAAGGAGATGCCATGCAAACACAAGTACCACACAGGATGCATCCTCTCATGGCTAGAACTTCATAGTTCTTGCCCATTATGCAGGTTTCAAATGCCTACTAATGAGTCTAAGAATGAGACAGGTGATGTTCCAAGTATCAGTGGAAGAGATCAAGTTTTCCAATTCGGAGCTGGAGCTGAGAATGAAAGATATGGAAGAAGGTACTGGCTTCCGGTCTTCTGGCCTTTCCGGAATTTCTTTACCTCTTCCAGGTTCACAACAGGTGGGAGTTCTACAGTCACACCATCAGATGGACCCATACAGGAACATGGTTCACAGGAGAACCTAATTGAAGACAATTAG | 1041 | 0.4342 | MEDATMGQYWCYMCSRLVNPIREVQNKCPFCETEFVEEVSDQGIPSDNLDSRFNRALSQFAPLFLGLMEGLNLPPALMTTPEFASNSASPEEEETEQEREQEVAFSSRRRNSISVISFFHQHPHVRMTSDSNENDHSRIVVFDNNGEEVFVLRGSFDLNQTQHPTQNSVPSLGGLPVGQSFNVLLQRLLDNDPNRYGTPPTQKAAIKAMPRVIIEDQSRCSICLEDLEIGAEAKEMPCKHKYHTGCILSWLELHSSCPLCRFQMPTNESKNETGDVPSISGRDQVFQFGAGAENERYGRRYWLPVFWPFRNFFTSSRFTTGGSSTVTPSDGPIQEHGSQENLIEDN* | 347 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte13g01110 | 346 | MobiDBLite | consensus disorder prediction | 78 | 107 | - | - | |
Pte13g01110 | 346 | FunFam | E3 ubiquitin-protein ligase RING1-like | 187 | 267 | - | - | |
Pte13g01110 | 346 | MobiDBLite | consensus disorder prediction | 321 | 346 | - | - | |
Pte13g01110 | 346 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 267 | IPR013083 | - | |
Pte13g01110 | 346 | SMART | ring_2 | 220 | 260 | IPR001841 | - | |
Pte13g01110 | 346 | MobiDBLite | consensus disorder prediction | 321 | 336 | - | - | |
Pte13g01110 | 346 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 131 | 162 | IPR001736 | GO:0003824 | |
Pte13g01110 | 346 | Pfam | zinc-ribbon | 8 | 38 | IPR039525 | GO:0061630 | |
Pte13g01110 | 346 | Pfam | Ring finger domain | 219 | 261 | IPR001841 | - | |
Pte13g01110 | 346 | ProSiteProfiles | Zinc finger RING-type profile. | 220 | 261 | IPR001841 | - | |
Pte13g01110 | 346 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 93 | 265 | - | - | |
Pte13g01110 | 346 | SUPERFAMILY | RING/U-box | 208 | 267 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte13g01110 | Pte-Chr13 | 11632654 | 11634038 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte13g01110 | 180 | 267 | C3H Transcription Factor Family | AT1G26800 | 47.191 | 5.34e-22 | 90.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte13g01110 | - | K11982 | tcc:18599911 | 274.633 |