Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01110 ATGGAGGATGCTACAATGGGTCAGTACTGGTGCTACATGTGCTCCCGGTTGGTGAATCCCATTAGAGAAGTTCAGAACAAATGCCCATTTTGTGAAACAGAGTTTGTGGAAGAAGTGAGTGACCAAGGAATCCCCAGTGACAACCTGGATTCAAGATTTAACCGTGCCCTCTCTCAGTTTGCTCCACTCTTTCTTGGTTTGATGGAAGGTTTAAATCTTCCTCCTGCACTCATGACAACTCCAGAATTTGCAAGCAATAGTGCCTCTCCAGAAGAGGAAGAGACAGAACAAGAAAGGGAACAGGAAGTAGCATTTAGTAGTAGGAGAAGAAACTCAATCTCTGTGATTAGCTTTTTTCATCAGCATCCACATGTAAGGATGACTTCTGACAGTAATGAAAATGATCATAGTAGAATTGTAGTCTTTGACAACAATGGAGAGGAGGTCTTTGTGCTTAGAGGTTCTTTTGACTTGAACCAAACACAACATCCAACCCAAAATTCAGTTCCCTCTTTAGGAGGTTTGCCAGTAGGACAAAGTTTCAATGTCCTGCTGCAGCGTTTGCTAGATAATGACCCCAACAGATATGGAACACCTCCAACACAGAAAGCAGCCATTAAAGCGATGCCTAGAGTGATTATCGAGGATCAATCACGGTGCAGTATATGTTTGGAGGATCTTGAAATTGGTGCTGAAGCTAAGGAGATGCCATGCAAACACAAGTACCACACAGGATGCATCCTCTCATGGCTAGAACTTCATAGTTCTTGCCCATTATGCAGGTTTCAAATGCCTACTAATGAGTCTAAGAATGAGACAGGTGATGTTCCAAGTATCAGTGGAAGAGATCAAGTTTTCCAATTCGGAGCTGGAGCTGAGAATGAAAGATATGGAAGAAGGTACTGGCTTCCGGTCTTCTGGCCTTTCCGGAATTTCTTTACCTCTTCCAGGTTCACAACAGGTGGGAGTTCTACAGTCACACCATCAGATGGACCCATACAGGAACATGGTTCACAGGAGAACCTAATTGAAGACAATTAG 1041 0.4342 MEDATMGQYWCYMCSRLVNPIREVQNKCPFCETEFVEEVSDQGIPSDNLDSRFNRALSQFAPLFLGLMEGLNLPPALMTTPEFASNSASPEEEETEQEREQEVAFSSRRRNSISVISFFHQHPHVRMTSDSNENDHSRIVVFDNNGEEVFVLRGSFDLNQTQHPTQNSVPSLGGLPVGQSFNVLLQRLLDNDPNRYGTPPTQKAAIKAMPRVIIEDQSRCSICLEDLEIGAEAKEMPCKHKYHTGCILSWLELHSSCPLCRFQMPTNESKNETGDVPSISGRDQVFQFGAGAENERYGRRYWLPVFWPFRNFFTSSRFTTGGSSTVTPSDGPIQEHGSQENLIEDN* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01110 346 MobiDBLite consensus disorder prediction 78 107 - -
Pte13g01110 346 FunFam E3 ubiquitin-protein ligase RING1-like 187 267 - -
Pte13g01110 346 MobiDBLite consensus disorder prediction 321 346 - -
Pte13g01110 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 267 IPR013083 -
Pte13g01110 346 SMART ring_2 220 260 IPR001841 -
Pte13g01110 346 MobiDBLite consensus disorder prediction 321 336 - -
Pte13g01110 346 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 131 162 IPR001736 GO:0003824
Pte13g01110 346 Pfam zinc-ribbon 8 38 IPR039525 GO:0061630
Pte13g01110 346 Pfam Ring finger domain 219 261 IPR001841 -
Pte13g01110 346 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Pte13g01110 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 93 265 - -
Pte13g01110 346 SUPERFAMILY RING/U-box 208 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01110 Pte-Chr13 11632654 11634038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01110 180 267 C3H Transcription Factor Family AT1G26800 47.191 5.34e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01110 - K11982 tcc:18599911 274.633