Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01104 ATGGAGGATGCTACAATGGGTCAGTACTGGTGCTACATGTGCTCCCGGTTGGTGAATCCCATTAGAGAAGTTCAGAACAAATGCCCATTTTGTGAGACGGAGTTTGTGGAAGAAGTGAGTGACCAAGGAATCCCCAGTGACAACCTGGATTCAAGATTTAACCATGCCCTCTCTCAGTTTGCTCCACTCTTTCTTGGTTTGATGGAAGGTTTAAATCTTCCTCCTGCACTCATGACAACTCCAGAATTTGCAAGCAATAGTGCCTCTCCAGGAGAGGAAGAGACAGAACAAGAAAGGGAACAGGAAGTAGCATTTAGTAGTAGAAGAAACTCAATCTCTGTGATTAGCTTTTTTCATCAGCATCCACATGTAAGGATGATTTCTGACAGTAATGAAAATGATCATAGTAGAATTGTAGTCTTTGACAACAATGGAGAGGAGGTCTTTGTGCTTAGAGGTTCTTTTGACTTGAACCAAACACAACATCCAGCCCAAAATTCAGTTCCCTCTTTAGGAGGTTTGCCAGTAGGACAAAGTTTCAATGTCCTGCTGCAGCGTTTGCTAGATAATGACCCCAACAGATATGGAACACCTCCAACACAGAAAGCAGCCATTAAAGCGATGCCTAGAGTGATTATCGAGGATCAATCACGGTGCAGTATATGTTTGGAGGATCTTGAAATTGGTGCTGAAGCTAAGGAGATGCCATGCAAACACAAGTACCACACAGGATGCATCCTCTCATGGCTAGAACTTCATAGTTCTTGCCCATTATGCAGGTTTCAAATGCCTACTAATGAGTCTAAGAATGAGACAGGTGATGTTCCAAGTATCAGTGGAAGAGATCAAGTTTTTCAATTCGGAGCTGGAGCTGAGAATGAAAGATATGGAAGAAGGTACTGGCTTCCGGTCTTCTGGCCTTTCCGGAATTTCTTTACCTCTTCCAGGTTCACAACAGGTGGGAGTTCTACAGTCACACCATCAGATGGACCCATACAGGAACATGTTTCACAGGAGAACCTAATTGAAGACAATTAG 1038 0.4335 MEDATMGQYWCYMCSRLVNPIREVQNKCPFCETEFVEEVSDQGIPSDNLDSRFNHALSQFAPLFLGLMEGLNLPPALMTTPEFASNSASPGEEETEQEREQEVAFSSRRNSISVISFFHQHPHVRMISDSNENDHSRIVVFDNNGEEVFVLRGSFDLNQTQHPAQNSVPSLGGLPVGQSFNVLLQRLLDNDPNRYGTPPTQKAAIKAMPRVIIEDQSRCSICLEDLEIGAEAKEMPCKHKYHTGCILSWLELHSSCPLCRFQMPTNESKNETGDVPSISGRDQVFQFGAGAENERYGRRYWLPVFWPFRNFFTSSRFTTGGSSTVTPSDGPIQEHVSQENLIEDN* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01104 345 Pfam Ring finger domain 218 260 IPR001841 -
Pte13g01104 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 264 - -
Pte13g01104 345 Pfam zinc-ribbon 8 38 IPR039525 GO:0061630
Pte13g01104 345 SMART ring_2 219 259 IPR001841 -
Pte13g01104 345 MobiDBLite consensus disorder prediction 78 105 - -
Pte13g01104 345 FunFam E3 ubiquitin-protein ligase RING1-like 186 266 - -
Pte13g01104 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 266 IPR013083 -
Pte13g01104 345 ProSiteProfiles Zinc finger RING-type profile. 219 260 IPR001841 -
Pte13g01104 345 MobiDBLite consensus disorder prediction 320 345 - -
Pte13g01104 345 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 130 161 IPR001736 GO:0003824
Pte13g01104 345 MobiDBLite consensus disorder prediction 320 335 - -
Pte13g01104 345 SUPERFAMILY RING/U-box 207 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01104 Pte-Chr13 11568700 11570052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01104 179 266 C3H Transcription Factor Family AT1G26800 47.191 5.72e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01104 - K11982 tcc:18599911 265.774