Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01100 ATGGAAGAGCCAAATGTTGTGTACAGAGGAGATGAAGTTCTGGATTTGCCTCCAGGCTTTAGATTCCATCCCACCGATGAAGAGATCATAACTCATTATTTGACTGAGAAGGTCCTGAATAGCAGCTTCAGTGCAACTGCAATGGGTGAAGCTGATTTGAACAAGTGCGAGCCTTGGGATTTGCCTCAGAAAGCCAAGATGGGAGAGAAAGATCAGTGGTACTTCTTTTGCCAGAAAGATAGAAAGTACCCAACAGGAACGAGAACAAATCGAGCAACTGAATCAGGTTACTGGAAGGCCACTGGGAAAGACAAAGAGATCTTCAAAGGCAAAGGTTGCCTCGTCGGGATGAAGAAGACCCTTGTCTTCTACAAAGGAAGAGCTCCCAAAGGAACGAAAACCAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTCGCTTGTTATCATCTTCCCAAAGCTTCAAAGGATGAATGGACTGTCTGCAAGGTTTTTCATAAGAACACTGGCATAAAAAAGACTACACTGCCTGAACTTCTAAGGACGAATTCCCTTGATGATCTGCTAGACTCTTCTTCACTTCCGCCGCTCATGGATTCTACATATGCAGAAATCGACAACCCAGGTGACAATGTATTCAAGGGAACAACAACAGTTTCCTCAGCAAAAATATCAGATCAAGGATACTACCTCGCTACGAAAAATCAATTGGTGAAGCAAGAGAACAACTGGAATTTTCCGATGCCCATCAATAGTTACATTGGCAACACCAGCAACCAGGACAACTTCACAAACCCAGTAGGGAACTCCATTTCAATGCACCCTCACCCTGGAGTTCGTGCCACAAATTCAAGTTTTCCTTACAAAGTAATGAATGAAGATCAGTACCGGCAAGGTTTTATGCAAGCTGGGAAGAACAGCTATGTTCCAAGTGTTACAGCTGAGGCTGGCTTTTGCGGCAGTGATGACGCAATTCTTAGAGCTTTTGCAGCCAACAATGACATATCTCATGGACTAGACAGACGGTTCAAAGTGGAGCAGTTCTCTTCAAACCAATCTCCTTTCACTCTCTCTCAGGACACTGGGCTAAGCAACGACATCCATACTGAAACATCATCCGTTATATCCAAGCAGGACATGAGAAACCACAGTGCATCTTACGACGATCTCGATGGTCCATCAGTTGCTCCCATGTCAGATCTAGATTGCTTGTGGGATGAATACTGA 1230 0.4415 MEEPNVVYRGDEVLDLPPGFRFHPTDEEIITHYLTEKVLNSSFSATAMGEADLNKCEPWDLPQKAKMGEKDQWYFFCQKDRKYPTGTRTNRATESGYWKATGKDKEIFKGKGCLVGMKKTLVFYKGRAPKGTKTNWVMHEFRLEGKFACYHLPKASKDEWTVCKVFHKNTGIKKTTLPELLRTNSLDDLLDSSSLPPLMDSTYAEIDNPGDNVFKGTTTVSSAKISDQGYYLATKNQLVKQENNWNFPMPINSYIGNTSNQDNFTNPVGNSISMHPHPGVRATNSSFPYKVMNEDQYRQGFMQAGKNSYVPSVTAEAGFCGSDDAILRAFAANNDISHGLDRRFKVEQFSSNQSPFTLSQDTGLSNDIHTETSSVISKQDMRNHSASYDDLDGPSVAPMSDLDCLWDEY* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01100 409 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 259 - -
Pte13g01100 409 SUPERFAMILY NAC domain 13 169 IPR036093 GO:0003677|GO:0006355
Pte13g01100 409 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Pte13g01100 409 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Pte13g01100 409 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Pte13g01100 409 FunFam NAC domain-containing protein 100-like 25 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01100 Pte-Chr13 11553039 11555152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01100 10 203 NAC Transcription Factor Family AT5G18270 74.384 1.05e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte13g01100 NAM 1.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01100 - - aprc:113861501 469.159