Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01084 ATGAATCCATCGTCTTCGTCATCGAAGAGCAAAAAGAAGCAGCCAACGCCGACAGCAGCAACTGAACAGAGAGAAACAGCATGGGGAGGGAGATATCTTGGAGTTAGAAGAAGGCCATGGGGAAGGTATGCAGCTGAGATTAGAGACCCTTCAACGAAAGAAAGGCATTGGCTCGGCACATTTGACACTGCTGAAGAAGCTGCTTTGGCCTATGATAGAGCAGCTAGGTCCATGCGTGGCTCTCGTGCTCGCACCAACTTCCTCTACTCTGACACCCCACCAGGTTGCTCAGTTACCTCTATCATCTCCCCTGAAGAACAAGCGGCACACCATGAAAGCCGTGACTTCTCTGCACTGTTCCTTCAGGGTGGTTCAGTCTCCCAACAACCAGACCCGACTGCTCAATTCAGCCAATGCCATTTCTCGGGTGGGTACCCGGTAATGTCAGCTGGGGACCCCTGGGTGTCTTCAGACTTTTACCATCAACAACAAGAACCCACTCCCACTGTCAGTTTTGATAGCCATATGAACAACTTTAACGGACTATACGATGACAACGTTGAGCTTCCTCCTTTACCTGCTTCTGAAATCGATATGTCCAGTTGTTTTGTGGAGCCTACTGGGTCGAGCTCGGTGTATGAAATGAGCATGGGGGTCTGGAATGGTTCGGGGTATTCGGACAATACGAGTGGGACAACAGCATCTTCGTTTGGCTCCTCATCGTACATGGGGTTTGACACAAGCGAGTACGTGCACAGCCCACTTTTCAGCAGAATGCCACCAGTTTCAGATACAGTTCAAGAGAGTTCTGATTTGGGGCATTCAAGCTACTTCTTCTGA 840 0.4988 MNPSSSSSKSKKKQPTPTAATEQRETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFLYSDTPPGCSVTSIISPEEQAAHHESRDFSALFLQGGSVSQQPDPTAQFSQCHFSGGYPVMSAGDPWVSSDFYHQQQEPTPTVSFDSHMNNFNGLYDDNVELPPLPASEIDMSSCFVEPTGSSSVYEMSMGVWNGSGYSDNTSGTTASSFGSSSYMGFDTSEYVHSPLFSRMPPVSDTVQESSDLGHSSYFF* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01084 279 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Pte13g01084 279 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Pte13g01084 279 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 164 - -
Pte13g01084 279 MobiDBLite consensus disorder prediction 1 31 - -
Pte13g01084 279 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Pte13g01084 279 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Pte13g01084 279 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Pte13g01084 279 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Pte13g01084 279 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Pte13g01084 279 MobiDBLite consensus disorder prediction 1 23 - -
Pte13g01084 279 FunFam Ethylene-responsive transcription factor 2 31 89 - -
Pte13g01084 279 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01084 Pte-Chr13 11359298 11360243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01084 4 265 AP2-EREBP Transcription Factor Family AT5G13910 44.106 3.88e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte13g01084 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01084 K09286 - qsa:O6P43_009772 319.316