Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01083 ATGAAAGATGTCTATACACTGAAGGTTCTTCAAAATGATATCGATTTGCTAAACCCACCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAACGTCTTGTTCAGGCACCGAACTCTTTCTTTATGGATGTCAAGTGCCAAGGTTGCTTCAACATAACCACTGTCTTCAGCCACTCCCAAACTGTTGTGAAATGCGGTAACTGCCAGACTGTATTGTGCCAGCCAACAGTGTTTCTTGTTGGTGACAACATGGACATGATGCTTTCGTCCTTTTTGGCTCTAGTATTAATTATGTTACCTTTGTGTGGTCGTATAAAACCTCTTGTCATGTCGTGTGTGGTAGCACGAACTGGTAGACACAGGCAACGATATGATGACAACAATCTTCGCCTTGTTTCTGGGTGCATACCCTATAGAATGATTCAGAACAACACCGTCAACAGTATAGAGGTTCTTATGGTTTCTTCACCAAATCGAGATGATCTTGTCTTTCCAAAGGGTGGATGGGAGAACGATGAGACATTAGTAGAAGCTGCTTGCCGTGAAGCCTTAGAAGAAGCAGGAGTCAGAGGCATTCTTAGGGAACAACATTTGGGAGTTTGGGAGTTCAGAAGCAAAAGCAGCCAGAAGAGATGTAGCCTGGAAGGAGGCTGCAAAGGGTACATGTTTGCCTTAGAGGTCACTGAGGAGCTTGAGATCTGGCCCGAGCAAGGAAACCGTCACAGGAAATGGCTTAAGATAAGAGATGCATTTAGACTTTGCCGGTATGAATGGATGCGTATGGCACTACAGGATTTCCTGAGAGTTATGACAGTGGAAGGAAAACTGAAGAACATGAAGATGGAGGAAGAAGTAAGTGGGTCTTCAGAATCGGCAGCAACTGCATCAAGTGTTGTGGAAGAATGTGGATTAAAGAAACAAAGCTATTTTTTGAAGCCTTCTAAAACTTCACATCATGGTATGAATGTTTTAGAAAAGTCATGCATGGCTCTGAGAGAGTGGGCAGTTTAA 1011 0.4362 MKDVYTLKVLQNDIDLLNPPAELEKRKHKLKRLVQAPNSFFMDVKCQGCFNITTVFSHSQTVVKCGNCQTVLCQPTVFLVGDNMDMMLSSFLALVLIMLPLCGRIKPLVMSCVVARTGRHRQRYDDNNLRLVSGCIPYRMIQNNTVNSIEVLMVSSPNRDDLVFPKGGWENDETLVEAACREALEEAGVRGILREQHLGVWEFRSKSSQKRCSLEGGCKGYMFALEVTEELEIWPEQGNRHRKWLKIRDAFRLCRYEWMRMALQDFLRVMTVEGKLKNMKMEEEVSGSSESAATASSVVEECGLKKQSYFLKPSKTSHHGMNVLEKSCMALREWAV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01083 336 CDD Nudix_Hydrolase_9 131 260 IPR047198 GO:0016462
Pte13g01083 336 ProSitePatterns Nudix box signature. 167 188 IPR020084 GO:0016787
Pte13g01083 336 FunFam Nudix hydrolase 13 mitochondrial 113 269 - -
Pte13g01083 336 FunFam 40S ribosomal protein S27 8 79 - -
Pte13g01083 336 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 114 271 - -
Pte13g01083 336 SUPERFAMILY Zn-binding ribosomal proteins 37 76 IPR011332 GO:0006412
Pte13g01083 336 ProSiteProfiles Nudix hydrolase domain profile. 128 267 IPR000086 -
Pte13g01083 336 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 114 269 - -
Pte13g01083 336 Pfam NUDIX domain 151 262 IPR000086 -
Pte13g01083 336 SUPERFAMILY Nudix 119 269 IPR015797 -
Pte13g01083 336 Gene3D - 12 81 IPR023407 -
Pte13g01083 336 Pfam Ribosomal protein S27 37 76 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01083 Pte-Chr13 11349498 11356169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01083 9 76 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.588 3.96e-43 142