Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01071 ATGAATTTCCAGAGTCATTTCCAAACAAAGATGAAGATGATATCGCCTTGTGATTTTTGTGAACACAGAACAGCGGTCTTGTACTGTAGAGCTGACTCCGCCAAGCTCTGTCTGTTTTGCGACCAGCAAGTTCACTCTGCCAATGCTCTCTCCCTCAAGCATGTTCGTTCTCAAATATGTAACTCTTGTGGGAATGAGCCAGCTACCATTCTGTGTTCCTCTGTCAATCTCATGATGTGCCATGATTGTTTCAACAACTCCTCAACCTCATCCATGTCTGTCGGAGACTGCACCCCTCTCGAAGGGTTCTCTGGCAATCCCTCACCTGCAGAACTCGCCTCTGTACTTGGGTTTCGTTTGAAAACCGAAAATTTCGTCAATATGGATCCTGCGTATGGTTTGCATGAGCCTCCTAAAAACTATGAGCCCCCTGTTTTTCAGTCCTTGTGCGAAGGACAGAATCTAAACTATGACAAGTATAAAGAAGAATTACACGAGCAATTACAACAGTTCGAGAAAAGATGTGATTTTCTTCTGACTGATAGTAGTAGTTCGGAATTGGTGCCTACAAGCCCGCCGAGTGAATCTGCACGGCAGCGGTTAATGGAGAGCTTTGATTTAGACAATCGTAAAGATGAGAACCACCTTCAGCAACAAAAGCCATTTACGTCTTCGCTTAGATCGCCTGATTACAGACATGGCAAGACTGAATGTGCATCTGCTGGTGATTTCATGTGGGAGTGCAATTTAACATATGAACCAAATCAGGTTTGGGATTTTCAAGTAGGGAAATCAAGACAATATGAAAAAACAAGTTTGAAGATAGCAGACTATGGATATGACTTTCAGGATTCTGGAATGAAATTTTGTAATGATGATCTGGAAGATACTTCTGTAACAGTTTCCAATATGTTTCATGGCATGCGTGATACAAGTGGCACGGCAGTTGCTGAGGACATTCTATTGAGATATAATCAATCTGACCAGTCATCTTCAAACCAAGTAATCAACACAAAAGCAAACAAAAATTTACAAGGAAGATTCGCATCAGATTCCTTGTCTGAATCCATCATGCACAGTGAAGAAAATTCTGTTTTTTCCATGGAGCAGCTTTTAATTGAGGGTGCAAATCTAGAAGCAGTTCCTAGTTTTAATGCAGATTTATTAGCGAAGTATAGAGGAGATGCCATGTTGCGCTACAAAGAGAAGAAGAAAACTCGCAGGTACGACAAGCACATTCGTTATGAATCCAGAAAGGCGAGAGCTGATATGAGGAAGCGAGTGAAAGGTCGATTTGTAAAAGCAAATGAAATGAGGGATGCTGATGTCAATGAGGATTGCTAA 1344 0.4159 MNFQSHFQTKMKMISPCDFCEHRTAVLYCRADSAKLCLFCDQQVHSANALSLKHVRSQICNSCGNEPATILCSSVNLMMCHDCFNNSSTSSMSVGDCTPLEGFSGNPSPAELASVLGFRLKTENFVNMDPAYGLHEPPKNYEPPVFQSLCEGQNLNYDKYKEELHEQLQQFEKRCDFLLTDSSSSELVPTSPPSESARQRLMESFDLDNRKDENHLQQQKPFTSSLRSPDYRHGKTECASAGDFMWECNLTYEPNQVWDFQVGKSRQYEKTSLKIADYGYDFQDSGMKFCNDDLEDTSVTVSNMFHGMRDTSGTAVAEDILLRYNQSDQSSSNQVINTKANKNLQGRFASDSLSESIMHSEENSVFSMEQLLIEGANLEAVPSFNADLLAKYRGDAMLRYKEKKKTRRYDKHIRYESRKARADMRKRVKGRFVKANEMRDADVNEDC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01071 447 Pfam CCT motif 393 435 IPR010402 GO:0005515
Pte13g01071 447 ProSiteProfiles CCT domain profile. 393 435 IPR010402 GO:0005515
Pte13g01071 447 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Pte13g01071 447 SMART bboxneu5 12 59 IPR000315 GO:0008270
Pte13g01071 447 Coils Coil 150 181 - -
Pte13g01071 447 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 16 437 - -
Pte13g01071 447 MobiDBLite consensus disorder prediction 208 232 - -
Pte13g01071 447 CDD Bbox1_BBX-like 16 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01071 Pte-Chr13 11151700 11155853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01071 14 437 C2C2-CO-like Transcription Factor Family AT2G33500 33.036 5.22e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte13g01071 CCT 8.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01071 - - qsa:O6P43_009706 348.977