Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01056 ATGGTAGTTAAATCGCCTAAACGAGTGGGTTCTATTGCTGACGATGGTGAGCTTCAAATGGTTGAAGGTAGAGGTTCCGAAGGGAAAAGGAAGAGTCCTAGGTCCAAGATTATTATCAAGTGCGGGAAAAAAGGAAAAGCTGAAAAGGATAAAGCACCTGCTTCTCGTCCGGCACAGGAGCAGAGAAGGTTCAGTACTAGGATCCAGAAACAACGTGCTGAGAAGGAGCTATCGGATTGTAAGAGGGTGGAGTTAATCGCTGGCCAAGAAAATGTTGGCGGGAAAAGCACGGAGTCAACAACTTTGAGCAACAAAAGGAAGCAAGCTGAGAAAAATGTGGGTGCGAAAAAGGTTGAGAAAGTCAATGGGTTGGTGAAAAAAGTTGATGTAGATGTCTCTGTGGAGAAAATTTCGATGGATGAGCAGGAGCTATTGGCTAGTAAAAGGGCTGAGAAGGAGCTATTGGTTCGTAAGAGGGTGGAGTTACTCGACGGACAAGAAGGTGGTGGTGGAGAATGCCAGGAGATGACGACTAGGAGTTCTAAAAGAAAGCGTGCTAAGAAAAATGTCTGTGCTGAAAACGGTAAGAAGGTTAATGGGTTGGTAAAAAAAGTTGATAATGTGAATGCGTCTTTGGCGAACATGATCGAGGGTGAGAGTACTGTTGCTGAAGGAGGTGAAGGTGCTGGTTCGGTTGAGAAAAGTGTCACCTTGAAGGTGAAGGAGACACTAAGGTTGTTTAACAAGCATTATCTTCATTTTGTTCAGGAGGAGGAAACGAGGTGTGCTAAGGTACAAGCTGATCGGAAAGCTCTTAGAAAAGGCTCAAAAACTAAGAAAGGGGTGCCTATAGAATGTGCAAAGAATTCTGCTAAACGACCTGATCTGAAGGCCATATCAAAGATGATTGAAAATGGTCAAGTTTTGTATCCTGATAAAAGAATTGGTGATGTTCCAGGAATTAAGGTCGGGCATCAATTTTATTCACGTGCTGAAATGGTTGCTGTCGGCTTTCATAGCCACTGGTTGAATGGCATTGACTTCATGGGCAAGTTATATAAGAAAACGTTCAGTAATTACACGTTCCCAATAGCTGTGGCCATTGTGTTGTCTGGTCAGTATGAGGATGATCTTGACAATGCTGAAGATGTAATCTACACTGGTCAAGGTGGTCATAATTTGACAGGTGATAAACGTCAAATCAGGGACCAGGTTTTGTTGCGTGGTAATTTGGCTCTCAAGAATTGTGTGGATCAAGATGTGCCTGTTAGGGTTATCCGTGGACATGAATCTAAAAGTAGTTACTGCGGCAAAGTTTACACATATGATGGATTGTATAAGGTCGATAGTTACTGGGCAGAGAAGGGAATCTCTGGATTTACAGTCTTCAAGTATCGCCTCAAGAGATTAGATGGACAGCCAGTACTGACCACTAACCAGGTTTTCTTTACATATGGACGTGTTCCAGAATCTGTGTCTGAGATACGTGGATTGGTGTGTGAGGATATCACTGGAGGTCGGGAGAATAAACCGATTCCTGCTACAAATTTGGTCGATGATCCACCCGTGGGACCTATAGGCTTCAAATATTGCAAGTCAATTCAAGTTTCCAAAAGTGTGAAGCTTCCCTCAAATGCTCCTGGGTGCAATTGCAAAGGAAGTTGTGTAGACCCTAGAAAATGTGCTTGTGCTATCCGCAATGGCTCTGATTTTCCTTATGTATCTCGTGATGGTGGCAGATTAATTGAAGCCAAAGATGTTGTGTTTGAATGCGGCCCTCTATGTGGCTGTGGCCCAGATTGTGTCAACCGCACATCTCAAAAGGGTCTTAGATACCGTCTGGAGGTTTTTCGCACAGCAAAGAAAGGTTGGGCTGTAAGATCTTGGGATTTTATTCCATCTGGTGCTCCTGTTTGTGAATACATTGGAAAACTGATTAGGGCAGAAGACTTGGACAATGCTGGTTCTTCTGGAAATTATTATATTTTTGACATTGATTGCTTACAGACTATGAGGGGCCTCGGAGGCAGAGAGAGGCGATCTCGAGATGCAGTCCCTTCTGTTAATGTCTTGGAAAGACCTGATGATCAGAAAATTGAAAGTCTATCAGAGTTCTGCATTGATGCAGGCTCCAATGGCAATGTGGCGAGGTTCATAAATCATAGTTGTGAGCCTAATCTATTTGTTCAATGTGTTTTGAGCTCACACCATGATCCAAAACTGGCTCGAGTGATGCTTTTTGCTGCTGACAACATACCTCCACTGCAGGAGTTGACGTACGACTATGGGTATCCTTTAGATAGTGTCGTGGGGCCAGATGGGAAGATAATTAAAATGGATTGCTATTGCGGTGCTCCAGATTGTAGGAAGCGTCTATTTTAG 2382 0.4353 MVVKSPKRVGSIADDGELQMVEGRGSEGKRKSPRSKIIIKCGKKGKAEKDKAPASRPAQEQRRFSTRIQKQRAEKELSDCKRVELIAGQENVGGKSTESTTLSNKRKQAEKNVGAKKVEKVNGLVKKVDVDVSVEKISMDEQELLASKRAEKELLVRKRVELLDGQEGGGGECQEMTTRSSKRKRAKKNVCAENGKKVNGLVKKVDNVNASLANMIEGESTVAEGGEGAGSVEKSVTLKVKETLRLFNKHYLHFVQEEETRCAKVQADRKALRKGSKTKKGVPIECAKNSAKRPDLKAISKMIENGQVLYPDKRIGDVPGIKVGHQFYSRAEMVAVGFHSHWLNGIDFMGKLYKKTFSNYTFPIAVAIVLSGQYEDDLDNAEDVIYTGQGGHNLTGDKRQIRDQVLLRGNLALKNCVDQDVPVRVIRGHESKSSYCGKVYTYDGLYKVDSYWAEKGISGFTVFKYRLKRLDGQPVLTTNQVFFTYGRVPESVSEIRGLVCEDITGGRENKPIPATNLVDDPPVGPIGFKYCKSIQVSKSVKLPSNAPGCNCKGSCVDPRKCACAIRNGSDFPYVSRDGGRLIEAKDVVFECGPLCGCGPDCVNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYIGKLIRAEDLDNAGSSGNYYIFDIDCLQTMRGLGGRERRSRDAVPSVNVLERPDDQKIESLSEFCIDAGSNGNVARFINHSCEPNLFVQCVLSSHHDPKLARVMLFAADNIPPLQELTYDYGYPLDSVVGPDGKIIKMDCYCGAPDCRKRLF* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01056 793 Pfam SAD/SRA domain 315 473 IPR003105 -
Pte13g01056 793 Pfam Pre-SET motif 504 604 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte13g01056 793 ProSiteProfiles YDG domain profile. 316 469 IPR003105 -
Pte13g01056 793 SMART preset_2 500 596 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte13g01056 793 MobiDBLite consensus disorder prediction 89 108 - -
Pte13g01056 793 SMART G9a_1 311 473 IPR003105 -
Pte13g01056 793 SMART set_7 612 769 IPR001214 GO:0005515
Pte13g01056 793 ProSiteProfiles Post-SET domain profile. 777 793 IPR003616 -
Pte13g01056 793 Gene3D - 299 484 IPR036987 -
Pte13g01056 793 Gene3D SET domain 495 793 IPR046341 -
Pte13g01056 793 Pfam SET domain 623 763 IPR001214 GO:0005515
Pte13g01056 793 MobiDBLite consensus disorder prediction 92 108 - -
Pte13g01056 793 ProSiteProfiles Pre-SET domain profile. 547 609 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte13g01056 793 MobiDBLite consensus disorder prediction 167 188 - -
Pte13g01056 793 SUPERFAMILY PUA domain-like 298 490 IPR015947 -
Pte13g01056 793 SMART PostSET_3 777 793 IPR003616 -
Pte13g01056 793 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 63 786 - -
Pte13g01056 793 ProSiteProfiles SET domain profile. 612 763 IPR001214 GO:0005515
Pte13g01056 793 SUPERFAMILY SET domain 497 770 IPR046341 -
Pte13g01056 793 CDD SET_AtSUVH-like 527 764 - -
Pte13g01056 793 MobiDBLite consensus disorder prediction 1 75 - -
Pte13g01056 793 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 146 793 IPR025794 GO:0016571
Pte13g01056 793 MobiDBLite consensus disorder prediction 41 75 - -
Pte13g01056 793 MobiDBLite consensus disorder prediction 20 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01056 Pte-Chr13 10905396 10920328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01056 302 794 EF-hand Containing Proteins AT5G13960 68.283 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte13g01056 SAD_SRA 1.2e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01056 K11420 - qsa:O6P43_009761 958.747