Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01054 ATGAATTTCGTGGAAATGGAGACACCAAACTTCACGACTTTTGGTGGAGGCTTGAAACTGCCTATTGGGTTTCGGTTCAGTCCTACAGATGAAGAGCTTCTCGTTCATTACTTGAAGAGGAAAGTCCAGGCTCTGCCATTGCCAGCTTCAGTTATATCTGAGTTTGATGTATTTCAAACTGAACCTTACGGTTTGCCAGGTGATTTGAACGAGAAGATGTATTTCTTTGGCATTAAAAAGAAGAATGCTTCTAATGTTCGTAGAAGAGTTGCTGGGTCTGGTTATTGGAAATCTATTGGCAAAGACAAGTCAATTGTAGCTTCTCAGACCAATCAAATTGTTGGTACGAGTAAAACAATGGTTTTCTGTGAACAAAAGGGATCTCATAGCTCTAGAACGAGTTGGATCATGCATGAGCTAAGCCTTGTCGGCTCTGGAATAACAAATACCAACCGGAACCAGGTGACCAACGAGGACATGGAAGATTGGGTTGTTTATCGTATATTTCAGAAGAAGAAGAAGAAGATAAGGCCTAGGATAAGTGGCATCAGAGTTCAACACTCGTTGGAGGAAACTAAACCCTGTGTCATAGATTTCACGCTGGAGCACTTCAATGGTGATCAGAGTCCTCCACCACCTTCTTCTCCAAATTGCAGTGAAGTCACCGTTGTCAGTTAA 678 0.4218 MNFVEMETPNFTTFGGGLKLPIGFRFSPTDEELLVHYLKRKVQALPLPASVISEFDVFQTEPYGLPGDLNEKMYFFGIKKKNASNVRRRVAGSGYWKSIGKDKSIVASQTNQIVGTSKTMVFCEQKGSHSSRTSWIMHELSLVGSGITNTNRNQVTNEDMEDWVVYRIFQKKKKKIRPRISGIRVQHSLEETKPCVIDFTLEHFNGDQSPPPPSSPNCSEVTVVS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01054 225 Gene3D NAC domain 29 176 IPR036093 GO:0003677|GO:0006355
Pte13g01054 225 PANTHER NAC TRANSCRIPTION FACTOR 56 20 176 - -
Pte13g01054 225 SUPERFAMILY NAC domain 11 171 IPR036093 GO:0003677|GO:0006355
Pte13g01054 225 Pfam No apical meristem (NAM) protein 21 141 IPR003441 GO:0003677|GO:0006355
Pte13g01054 225 ProSiteProfiles NAC domain profile. 20 171 IPR003441 GO:0003677|GO:0006355
Pte13g01054 225 MobiDBLite consensus disorder prediction 204 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01054 Pte-Chr13 10807874 10809361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01054 16 173 NAC Transcription Factor Family AT5G13180 51.250 9.55e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte13g01054 NAM 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01054 - - qsa:O6P43_009732 217.238