LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte13g01047	ATGGGCTACTGGTCATGTTTTGGGTCTTGGAGGAGGAGGAGACGCAGCAAGGCTGAGGACAATAGTTGCAACAGTGAAACTCGAATGGTTGCAAAAGCTGAGAAGAACACATCCGAATCTGTGAACCGCACCCCCGAAAAACCTTCTGAGCCTGAAAGAGACTTATCCGTTGAACCAGTGGTATCCAGTAAGGTATTTACCTTTGGAGAACTTGCTTACGCTACTGAGAATTTCAGAGATGAGTCATTCATTGGGCAAGGCGGATTTGGATCTGTCTACAAAGGCAAGTTAGAAAGAACTGGTCAGGTGGTAGCTGTTAAAAAACTTGACCAGACAGGTGTCCAAGGAGACAGAGAGTTTCTGGTTGAAGTTCTCATGCTTTCGCTCATGCGTCATTCTAACCTTGTCAACTTGGTTGGTTACTGTGCAGAAGGGAACCAAAGGCTTCTTGTATATGAGTTCATGCCCTTGGGGTCCTTGGAAAGCCGCCTCCATGATCGTTCCCCTAATGTGAAGCCATTAGACTGGAACACAAGGATGATGATAGCTATGGGGACAGCAAAAGGATTGAATTATCTACACAATGAAGCTGATCCTCCTGTTATATACAGGGATCTAAAATCAGCCAACATATTACTGGACGTAGATTGTCATCCAAAGCTCTCTGATTTTGGTCTAGCCAAATTTGGTCCAAGTGGCGATAAGACACATGTGTCCACCAGAGTTATGGGAACCCATGGTTATTGTGCCCCAGAATATGCGATCACTGGAAAATTGACATCTAAATCTGACATATACAGTTTTGGGGTGGTCTTGTTGGAGCTCATCACTGGAAGGAGAGCACTAGATGAGGAACGTGGCGATGACAGACTTCTCGTTGCATGGGCAAGGCCATGGATGGAAGACCGACAGACTTGCTCACGATTAGGAGACCCGGATTTGCGTGGTCAAGTCTCAGAGTCTGTTCTAACAAAGGCAATAAAAGTAGCATCCATGTGTCTCAGAGAAAACCCTGGAACCCGCCCTCAGATAAGTGATGTTGTGCTTGCTCTAGATTTCATAGCATCCTGTATGCCAAACTCTCGTAAGAAAAATAAAGGGGATCGACGGAGTGCTGATGAGCCTCAGAACGACAAAACGAAGGTACAGAAGAAAGATCGAGAGGTAGCTGTTGCAGAGGCCAAGATGTGGGCAGAAGCTTTCACAGAAAACAGACGCCGAGGTCCGAGTAAAGATGATGAAAATATCACAAGTAGGTGA	1260	0.4587	MGYWSCFGSWRRRRRSKAEDNSCNSETRMVAKAEKNTSESVNRTPEKPSEPERDLSVEPVVSSKVFTFGELAYATENFRDESFIGQGGFGSVYKGKLERTGQVVAVKKLDQTGVQGDREFLVEVLMLSLMRHSNLVNLVGYCAEGNQRLLVYEFMPLGSLESRLHDRSPNVKPLDWNTRMMIAMGTAKGLNYLHNEADPPVIYRDLKSANILLDVDCHPKLSDFGLAKFGPSGDKTHVSTRVMGTHGYCAPEYAITGKLTSKSDIYSFGVVLLELITGRRALDEERGDDRLLVAWARPWMEDRQTCSRLGDPDLRGQVSESVLTKAIKVASMCLRENPGTRPQISDVVLALDFIASCMPNSRKKNKGDRRSADEPQNDKTKVQKKDREVAVAEAKMWAEAFTENRRRGPSKDDENITSR*	420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte13g01047	419	SMART	serkin_6	78	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte13g01047	419	Gene3D	Phosphorylase Kinase; domain 1	35	154	-	-
	Pte13g01047	419	MobiDBLite	consensus disorder prediction	362	389	-	-
	Pte13g01047	419	SUPERFAMILY	Protein kinase-like (PK-like)	64	361	IPR011009	-
	Pte13g01047	419	FunFam	probable serine/threonine-protein kinase RLCKVII	52	154	-	-
	Pte13g01047	419	MobiDBLite	consensus disorder prediction	361	389	-	-
	Pte13g01047	419	MobiDBLite	consensus disorder prediction	39	54	-	-
	Pte13g01047	419	MobiDBLite	consensus disorder prediction	23	38	-	-
	Pte13g01047	419	Gene3D	Transferase(Phosphotransferase) domain 1	155	380	-	-
	Pte13g01047	419	MobiDBLite	consensus disorder prediction	12	56	-	-
	Pte13g01047	419	CDD	STKc_IRAK	84	348	-	-
	Pte13g01047	419	ProSiteProfiles	Protein kinase domain profile.	78	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte13g01047	419	MobiDBLite	consensus disorder prediction	400	419	-	-
	Pte13g01047	419	Pfam	Protein kinase domain	79	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte13g01047	419	FunFam	Serine/threonine-protein kinase PBS1	155	370	-	-
	Pte13g01047	419	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
	Pte13g01047	419	PANTHER	OS07G0668900 PROTEIN	25	363	-	-
	Pte13g01047	419	ProSitePatterns	Protein kinases ATP-binding region signature.	84	108	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte13g01047	Pte-Chr13	10752171	10755462	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte13g01047	1	410	Glycoside Hydrolase	AT3G07070	51.559	3.78e-141	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Pte13g01047		Pkinase	1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte13g01047	K13430		-	qsa:O6P43_009734	486.493