Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01040 ATGCCACTCTATACCTCTGGAAGAAAACATGAGTGGAGAGAAACAGTGACTCTTAGGTTTTCTCTTGATGATGGTAGAAAGCTTTCTGTTGTTCAATATTTTCACGAGAAGTACAACATTGTGCTTAAGCATGTCTCTCTTCCTGCACTTCAGACTGGGAGTGATTCCAAACCTGTTTTTCTACCTTTTGAGCTTTCAACGATTGCACCTGGACAAAGGTATTCACAGATACTAAATGAAAATCAAGTTAGAAATTTTCTAAAAGCAACTTGTCATCCTCCATCTGACAGAGAGCGCTACATTGAACAGATAGTTAGAGATAATGATTTCAATGGAGATGACCGTGTAAGAAATGAATTTGGGATTCAAGTAGATAAGGATATGACAATGGTACATGCTCGAGTTTTGCCAGCTCCAATGGGAAAAGCTTTGTCCCTGCTTAGATATCATGACATGGGGAAGGAGAAAGTGGTTGATCCAAAAATGGGTCAGTGGAATATGATAAACAAGGCAATTACTTTTTCCCCTTTTAAATTTTTAAAAAATGGTGGTAAAGTGGAGTATTGGACATGTGTGAGTTTTTCTACTAAGTACTACGCAGAGATATGGTCTTCGTATTTTCTATGTGCTAGCAAAGGGATGGTTGGGGGGCAAAATAGCGTGTTGAATGATGCGTTGTTGAGAAGACTTCCACTTGTTAGTGATCGACCTACTATAATCTTTGGCGCTGACGTTAAACATCCACAGCCTGGGGAGGACTCTAGTCCATCAATAGCAGCTGTTGTTGCATCTATGGATTGGCCAGAGATCACAAAATACAAGGCACTGGTTTCTGCACAAGGTCACCGTGATGAAATCATACACGATCTCTATAGAAGTTATGAGGATCATCAAAAGGGAACTGTCCATTTAGGAATGATACGAGATGGAGGGAGTGAAGGTCAATTTAGTGAAGTTTTGCTTCGTGAGGTGGTCGCTATAAGAAAGGCATGTGGCTCACTAGAGCAAAATTATCAACCACCTGTCACATTTGTGGTCGTGCAACAAAGACACCACATGAGGCTTTTTCCTCTAGATCATTCGAATCGTAATCAGACAAATCAAAGTGGCAATATTCTTCCGGGTACTGTTGTCGATATGGAAATATGCCACCCAACAGAATTTGATTTTTACCTTAATAGCCATGCTGGAATTCAGGGGACCAGTAGGCCTACTCATTATCATGTTCTTTTTGACGAGAATCAGTAA 1248 0.4038 MPLYTSGRKHEWRETVTLRFSLDDGRKLSVVQYFHEKYNIVLKHVSLPALQTGSDSKPVFLPFELSTIAPGQRYSQILNENQVRNFLKATCHPPSDRERYIEQIVRDNDFNGDDRVRNEFGIQVDKDMTMVHARVLPAPMGKALSLLRYHDMGKEKVVDPKMGQWNMINKAITFSPFKFLKNGGKVEYWTCVSFSTKYYAEIWSSYFLCASKGMVGGQNSVLNDALLRRLPLVSDRPTIIFGADVKHPQPGEDSSPSIAAVVASMDWPEITKYKALVSAQGHRDEIIHDLYRSYEDHQKGTVHLGMIRDGGSEGQFSEVLLREVVAIRKACGSLEQNYQPPVTFVVVQQRHHMRLFPLDHSNRNQTNQSGNILPGTVVDMEICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01040 415 CDD PAZ_argonaute_like 17 69 - -
Pte13g01040 415 Gene3D - 230 415 IPR036397 GO:0003676
Pte13g01040 415 SUPERFAMILY Ribonuclease H-like 216 414 IPR012337 -
Pte13g01040 415 Gene3D paz domain 8 76 - -
Pte13g01040 415 Pfam Argonaute linker 2 domain 96 140 IPR032472 -
Pte13g01040 415 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 215 414 - -
Pte13g01040 415 SUPERFAMILY PAZ domain 17 110 IPR036085 GO:0005515
Pte13g01040 415 ProSiteProfiles PAZ domain profile. 20 70 IPR003100 GO:0005515
Pte13g01040 415 Pfam PAZ domain 13 85 IPR003100 GO:0005515
Pte13g01040 415 SMART Piwi_a_2 190 415 IPR003165 GO:0003676
Pte13g01040 415 ProSiteProfiles Piwi domain profile. 215 415 IPR003165 GO:0003676
Pte13g01040 415 Pfam Piwi domain 215 414 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01040 Pte-Chr13 10609927 10613965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01040 215 414 Eukaryotic Initiation Factors Gene Family AT1G48410 67.873 9.28e-95 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01040 K11593 - pop:7472995 320.472