Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01029 ATGGAGGAAGCGAATGAAAAGTGCTGGAGAAAGGAAGTGGACGAAAACCTAGAGCGGCTCCACTCCCTGTTATTCGGAGCCGAGATCGCCCTCGACAAGAAAGACGACTCCTCTGCTCACTTACTCGGCCTCCGTCTTCTCGGTTTCCTCGATTCTCACTGTCAATCTGATGTTGATGCCGCCTTCATCCGTCCCATTCGCCGTGAAACTCTCTCTATGGTCGACGCTGCTCGCCGATCGCTCATCCCCGACCTCGATCGTCAAGCGTTTGAGCTAGCAAAGATGGCTCCCGGTTGCATTTTTGGCTCAGGAAGGGACTTGGATATCGACAAGGTTAAACAGTCAAAATATTTCCAAGCTCTGGCTACACGATCTATGAAAAGGGTCGACAATGAAGTGGGAGGTCTACTGAGAAGGCAAGATAAACTTAAAGGGAAGACACCAAAAGCTACGATGCAGACAAAGTTGACGTCCTTGTATGGAAATAACTCCTCAAGTGCTATTAATGGTTCAAATAGTTCTTTGAACTCAAAAGTAAACAGAAACGAGGACTGCCTCGGCATAGAAAAGTCACACTTCCATAGCAACCATATGAAGGCTAATGGTGATTCTTTGCTCGATGTGGAAGAAGAGGAAAGAACTAATGGAAATAGTCTGGGGATGAAACGGGCACACATTGAAATTACTAATCCCCGAGCTACCAATGTAAAATCACCTGCAGCTGCAAGCAAGGAAGATGGTGCAGATATCTCTGGAAATGGTTTTGTCACAGCTAGAATGAAACTGGAAATGGATTCAAAACAAAAGCGGGGAATGTCAAGTTCACCAAATGCGTCTATTTCCCCAAGATATGACAATGATTCCACTACTCGATTATATGGCGGTCGACCATATGGCATTACCAGACGTGGCATCCGTGGTAATTTTGTTCCTCCTATCAAAGCTAATGGGAATAGTGCAGGTAATATGACTTCACGGGCGGCTGGAAAGTGTGATGATGCTTTAGATGACTCCACAAAGAGATGCTTGGAAATGCTATGTGGTCCTGATGGTGAACTTCCTGAGAAATTAAGGAATTTGGAACCCCGCCTCATTGAACATGTTAGTAATGAAATTATGGACAAAGACCCCAATGTTCGCTGGGATGACATAGCTGGCCTGGAACATGCAAAGAAATGTGTCACTGAGATGGTAATATGGCCTCTGTTACGGCCAGACATATTTAAAGGCTGCCGCTCTCCCGGAAGAGGCCTGCTTCTATTTGGTCCTCCCGGGACTGGTAAAACAATGATTGGGAAAGCCATAGCTGGAGAGGCGAAAGCAACCTTTTTCTACATATCTGCCAGTTCCTTAACTAGCAAATGGATTGGTGAAGGTGAAAAGCTAGTGAGGGCCCTTTTTGGTGTTGCTAGTTGCCGCCAGCCAGCTGTAATATTTGTTGATGAAATTGATTCTCTTCTATCTCAGCGTAAGTCTGAAGGTGAACATGAATCAAGTAGACGACTGAAAACACAATTCCTCATCGAAATGGAAGGCTTTGGCAGTGGAAGCGAGCAGATTCTGCTAATAGGAGCAACAAATCGTCCGCAGGAGCTTGATGAAGCTGCACGGAGGCGACTCACCAAGAGACTATACATTCCCCTTCCATCGTCAGAGGCGAGATCCTGGATTGTACGGAACCTCTTGGAGAAAGATGGATTGTTTAACTTATCGAAGGATGAAATGGATACCATCTGCAAACTTACTGAAGGTTATTCTGGATCAGATATGAAAAATCTAGTCAAGGATGCGTCTTTGGGTCCACTACGAGAAGCTTTCGGACAAGGCATAGAGATAACAATGCTGGAAAAGGATGATATGCGGCCAGTAACGTTGCAGGACTTTGAGAATGCATTGCAGCAAGTGAGGCCCTCAGTTTCCCAAAGTGAACTTGGCAGTTATGATGATTGGAACAAAAAATTTGGAAGTCTAACTCTATAG 1980 0.453 MEEANEKCWRKEVDENLERLHSLLFGAEIALDKKDDSSAHLLGLRLLGFLDSHCQSDVDAAFIRPIRRETLSMVDAARRSLIPDLDRQAFELAKMAPGCIFGSGRDLDIDKVKQSKYFQALATRSMKRVDNEVGGLLRRQDKLKGKTPKATMQTKLTSLYGNNSSSAINGSNSSLNSKVNRNEDCLGIEKSHFHSNHMKANGDSLLDVEEEERTNGNSLGMKRAHIEITNPRATNVKSPAAASKEDGADISGNGFVTARMKLEMDSKQKRGMSSSPNASISPRYDNDSTTRLYGGRPYGITRRGIRGNFVPPIKANGNSAGNMTSRAAGKCDDALDDSTKRCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEGFGSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARSWIVRNLLEKDGLFNLSKDEMDTICKLTEGYSGSDMKNLVKDASLGPLREAFGQGIEITMLEKDDMRPVTLQDFENALQQVRPSVSQSELGSYDDWNKKFGSLTL* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01029 659 FunFam Fidgetin-like 1 377 560 - -
Pte13g01029 659 Gene3D - 377 651 IPR027417 -
Pte13g01029 659 MobiDBLite consensus disorder prediction 269 288 - -
Pte13g01029 659 ProSitePatterns AAA-protein family signature. 520 539 IPR003960 GO:0005524|GO:0016887
Pte13g01029 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 654 IPR027417 -
Pte13g01029 659 Pfam ATPase family associated with various cellular activities (AAA) 418 548 IPR003959 GO:0005524|GO:0016887
Pte13g01029 659 FunFam Fidgetin like 1 549 635 - -
Pte13g01029 659 MobiDBLite consensus disorder prediction 265 297 - -
Pte13g01029 659 Pfam Vps4 C terminal oligomerisation domain 621 655 IPR015415 -
Pte13g01029 659 Gene3D - 549 635 - -
Pte13g01029 659 PANTHER AAA DOMAIN-CONTAINING 207 656 - -
Pte13g01029 659 SMART AAA_5 414 550 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01029 Pte-Chr13 10400053 10406945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01029 333 658 Calmodulin-binding Proteins AT3G56690 32.047 4.10e-43 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01029 K22766 - qsa:O6P43_004816 961.444