Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00989 ATGGCCTCTTCCAGCTACGCCTGCTCTCCTTGTGCTGCCTGCAAATTCCTAAGGAGGAAATGCTTGCCGGATTGCATTTTCGCACCGTACTTTCCACCAGAAGAGCCCCAGAAATTTGCTAATGTCCACAAAATATTTGGTGCAAGCAATGTGAGTAAACTACTGAATGAAGTTCAACCTTACCAGAGAGAGGATGCAGTCAACTCTCTGGCGTACGAAGCAGAAGCTCGGATAAAAGATCCAGTATACGGATGTGTTGGAGCTATCTCAATCCTTCAAAGACAAGTCATTCGACTTCAAAAGGAACTGGACGCCACCAATGCTGATTTGATTCGTTATAGCTGTAATGGAATGGCAACTACTACAGCTTCTCACCAATTTGGAAGGAAGATAGCTCCTCAGGGAGGAGGGTCACACTCGGTTGCTCAGTATCCAGATCCATACTATGGTTCACCATGGAACCTTCATCCTTGTGGTGATCATAACCATAACATGATGAAGGGAGATAATAATTGA 516 0.4496 MASSSYACSPCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISILQRQVIRLQKELDATNADLIRYSCNGMATTTASHQFGRKIAPQGGGSHSVAQYPDPYYGSPWNLHPCGDHNHNMMKGDNN* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00989 171 Coils Coil 89 109 - -
Pte13g00989 171 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pte13g00989 171 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Pte13g00989 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00989 Pte-Chr13 9511812 9513996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00989 4 123 AS2 family AT3G27650 79.339 1.76e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte13g00989 LOB 7.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00989 - - gmx:100306630 262.307