Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00984 ATGGACTCTTCAGCCAATGAAGCTGCTGTTTCCAATTCAGAAACCAATAATTTTAGGTCCTTTGACCATAGAGAAGAAGATGATGACAAGTCGCAACCTCACACTGGGGATGGTGCCAGTCCTGGAAAAATATTTATAGGAGGTTTAGCAAGAGAAACAACCATAGCCCAATTTATCAAGCATTTTGGTAAGTATGGTGATATCACGGATTCTGTGATTATGAAGGACCGAAAGACCGGGCAACCTCGTGGGTTTGGGTTTATAACTTACGCAGATCCCTCAGTGGTTGACCAAGTTATTCAAGACAACCATGTCATTAATGGAAAACCAGTGGAAATTAAGAGGACAATACCAAGGGGAGCTGCAGGTTCTAAGGATTTCAAGACGAAGAAGATTTTTGTGGGGGGTATTCCTTCAACTGTGAATGAAGAGGAGTTTAGAGACTTCTTTACACGTTATGGTGAGGTCAAGGAGTACCAAATAATGCGAGACCATTCTACCAATCGCTCTCGTGGCTTTGGGTTTATTACATTTGACTCGGAAGAAGCAGTGGACGATCTCTTGGTTAAAGGAAACAAGATTGAGTTTGCTGGAGCTCAGGTGGAAATAAAGAAGGCTGAACCTAAGAAGCCAAATCCACCACCTCCTGCATCTAAGCGTTATGGTGATTCAAGGCCCCCTTTTGGTGGCAGCTATGGTGATGCTTATGATGGTTTTGGAAGTGGCTTTAGTGGTGGTGCAGGTTACAGATCGAGTGGGCCCTATGGCAACAGAACTGGTGCTTATGGTGGCTTTGATGCAAGTGAATTTGGTGGGTATGGAGGCTATGGAGGCTATGGTGGTCCAATGGGGCCTTATCGGGGAGATCCCTCTCTAGGTTACTCAGGTCGCTATGGAGGTTTTAGGGGCTATGATCTTGGTGGTTATGGCGGACCTGGTGAAAGTTATGGGGGATATGGAGGTCCTGGTGCTTCTGGTGGGGCCTATGGAAGCAATTACGAGGGAAGTTATGGAAGTGGTAATGGAGGTGCATTCTATGGAGGTAGAGGGGGATATGGAGGAGGAGGTAGCAGTCGGTATCATCCTTATGGAAGGTAG 1098 0.4608 MDSSANEAAVSNSETNNFRSFDHREEDDDKSQPHTGDGASPGKIFIGGLARETTIAQFIKHFGKYGDITDSVIMKDRKTGQPRGFGFITYADPSVVDQVIQDNHVINGKPVEIKRTIPRGAAGSKDFKTKKIFVGGIPSTVNEEEFRDFFTRYGEVKEYQIMRDHSTNRSRGFGFITFDSEEAVDDLLVKGNKIEFAGAQVEIKKAEPKKPNPPPPASKRYGDSRPPFGGSYGDAYDGFGSGFSGGAGYRSSGPYGNRTGAYGGFDASEFGGYGGYGGYGGPMGPYRGDPSLGYSGRYGGFRGYDLGGYGGPGESYGGYGGPGASGGAYGSNYEGSYGSGNGGAFYGGRGGYGGGGSSRYHPYGR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00984 365 MobiDBLite consensus disorder prediction 1 17 - -
Pte13g00984 365 SUPERFAMILY RNA-binding domain, RBD 38 120 IPR035979 GO:0003676
Pte13g00984 365 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 122 - -
Pte13g00984 365 Gene3D - 2 121 IPR012677 -
Pte13g00984 365 MobiDBLite consensus disorder prediction 18 34 - -
Pte13g00984 365 Gene3D - 122 222 IPR012677 -
Pte13g00984 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Pte13g00984 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Pte13g00984 365 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 17 365 - -
Pte13g00984 365 MobiDBLite consensus disorder prediction 1 43 - -
Pte13g00984 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Pte13g00984 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Pte13g00984 365 SUPERFAMILY RNA-binding domain, RBD 127 238 IPR035979 GO:0003676
Pte13g00984 365 SMART rrm1_1 131 204 IPR000504 GO:0003723
Pte13g00984 365 SMART rrm1_1 43 114 IPR000504 GO:0003723
Pte13g00984 365 MobiDBLite consensus disorder prediction 204 226 - -
Pte13g00984 365 FunFam Heterogeneous nuclear ribonucleoprotein 1 123 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00984 Pte-Chr13 9465756 9468302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00984 42 196 Eukaryotic Initiation Factors Gene Family AT1G71770 25.309 4.02e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00984 K12741 - qsa:O6P43_008913 389.037