Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00980 ATGAATAAATCAAGATATCGTGTCCGGCCATCCCTACGGCAAACTCTCCCTGCTCCTTGCCCCGTGCTATTTGTACATCTGAGTTGGCTCGACAGCAGAGGATTTGCAAAAAAAGTTAAAATTGCTACTCTATCTTCAGCTTATCAAATAAAAGACTGTGGTGCATATAGGGAATGCCCCAATTGCCACCGTCTGATTAACTATAAAGATATAGTTCCTGAATGGCCTGGCCTTCCTGCTGGTGTGAAGTTTGACCCTTCTGATGATGAGCTTTTAGAGCACTTGGCAGCAAAATGTGGCATTGGAAGCTCAAAGCCCCACAAGTTCATCAATGAGTACATCCCAACGCTTGAGGGGGATGAAGGCATCTACTACACACATCCAGAAAATCTGCCAGGTGCTAAGAAAGATGGCAGCAGTGTCCATTTCTTTCACCGGATAATCAAGGCATACACCACTGGTCAGCGGAAGCGTCGCAAGATTAATCATCGTGATTCGGTCGAGGAGCATGTTCGCTGGCACAAAACTGGTAGGACCAAGCCTGTGCTTGTTAATGGGGTCCAGAAGGGATTTAGGAAGATCATGGTTCTTTATGGGAGATTAAAGGAAGGATCCAAACCAAATAAATCCAATTGGGTTATACATCAATACCATTTGGGCTGTGAAGTAGATGAGAAGGATGGAGAATATGTTGTTTCCAAAGTTTTCTTTCAACAGCCAAGGCAGATTGAGAAGAAGAGATTGATTATTGATGATACCGATTCTACTACAGCACAGGCAAGTCCAAGAACGCCAAATAAAGATCCCCCTAATCCTCCTCGACCTGGGAAATCTGTTCAAGGTGGTGGTACTGTTGAGGATAATCTATCACCATTAGCCACCCAGGATGCGGAGTTCAAAGTCGAAGGTTTTCTTGCCTCTCAAACTGATAATCAGGCTGATGTCAATTTGACTGATTTAGCGTGGTTGGCTGGTGAATCACAAGTTACTGAAAGCTCTAACTGGGCTACGTTGAGTGACCCCTTACTGTGCAACGAGAATACCTATTTTCCTGCTCCAGGAAACGACTCTGCACTGGATTGTATCACCTTCAATGGCTTTGGTTGCATCAGAAATGATGTAAATTCAAACAATGCGTCCAGTGGGATTGCTGACCTAGAAACGGATACCTCACCAGATTTCCACCTCTCGAATTTGCAATTTTCTTCCCTAGACAGTGTGTTTGACTGGATAGACAGGTTATGA 1245 0.4434 MNKSRYRVRPSLRQTLPAPCPVLFVHLSWLDSRGFAKKVKIATLSSAYQIKDCGAYRECPNCHRLINYKDIVPEWPGLPAGVKFDPSDDELLEHLAAKCGIGSSKPHKFINEYIPTLEGDEGIYYTHPENLPGAKKDGSSVHFFHRIIKAYTTGQRKRRKINHRDSVEEHVRWHKTGRTKPVLVNGVQKGFRKIMVLYGRLKEGSKPNKSNWVIHQYHLGCEVDEKDGEYVVSKVFFQQPRQIEKKRLIIDDTDSTTAQASPRTPNKDPPNPPRPGKSVQGGGTVEDNLSPLATQDAEFKVEGFLASQTDNQADVNLTDLAWLAGESQVTESSNWATLSDPLLCNENTYFPAPGNDSALDCITFNGFGCIRNDVNSNNASSGIADLETDTSPDFHLSNLQFSSLDSVFDWIDRL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00980 414 Gene3D NAC domain 87 242 IPR036093 GO:0003677|GO:0006355
Pte13g00980 414 Pfam No apical meristem (NAM) protein 79 219 IPR003441 GO:0003677|GO:0006355
Pte13g00980 414 SUPERFAMILY NAC domain 66 238 IPR036093 GO:0003677|GO:0006355
Pte13g00980 414 FunFam NAC domain-containing protein 8 87 242 - -
Pte13g00980 414 ProSiteProfiles NAC domain profile. 78 238 IPR003441 GO:0003677|GO:0006355
Pte13g00980 414 MobiDBLite consensus disorder prediction 247 289 - -
Pte13g00980 414 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 29 311 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00980 Pte-Chr13 9431135 9434333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00980 59 242 NAC Transcription Factor Family AT1G28470 57.368 2.39e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte13g00980 NAM 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00980 - - qsa:O6P43_004700 459.529