Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00945 ATGTTTATGACATCATATTACGTTCTCTTCGCGATGTTATTTGTAATATTGTTCAGCATCTTCCAAGTAAAGTATCTGGGCTGGATTGCGGTGTTGAACTTGAGTATAGCGGTTTCTATTTTAGATGACAGACAAAGGGATGCAGCATTAGTGGTGTCTGAATATCATAGTAGAGGTGCCAGGCACTATGGAACTATGTTACTGCTTGTTTCAATTTCATGGTTGGTTTCCTTAATATTGATATGCTTCTATTTATCGTGGCATGGTATAGCAAAGCATAATCTTGACAATCACTGTAGAGCTGAGCTAACAAAATCACTACCAGGGGTGAGAATTCATCACAGTGAAACCTCCATTACTATTCTTAGCTCTTTCAGGGTTCGCCATGGTTATGCGCATGTAGCTAACAATTTGTACTTAGGCTGGCTGCACTATGCCATTGGTGGCAGCATGAATCCTACCATTAAAAGTGAAGCCAATCTTTTCATCGCACCAAAATCAGGGAGCAAAGAGGTCACATGGAGAAATGGTGGTAACGACGAAGTAGGGACATGGAAGTTTTATTCAGTGGGGGATGTTTTTGAGAATGGTGCTGTGTTCAACGTTCAATCAGGTGTGGGTGGAGCAAAGCCTAACTACGACAATGAACAACGTTTTCAAGTTGTAAATGCTGGACTAGTGAGGTCGTTGACAAGTTCATCAGGCGCTTTAAAATGCACAGAAAATTCTCATTGCTGA 738 0.4106 MFMTSYYVLFAMLFVILFSIFQVKYLGWIAVLNLSIAVSILDDRQRDAALVVSEYHSRGARHYGTMLLLVSISWLVSLILICFYLSWHGIAKHNLDNHCRAELTKSLPGVRIHHSETSITILSSFRVRHGYAHVANNLYLGWLHYAIGGSMNPTIKSEANLFIAPKSGSKEVTWRNGGNDEVGTWKFYSVGDVFENGAVFNVQSGVGGAKPNYDNEQRFQVVNAGLVRSLTSSSGALKCTENSHC* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00945 245 PANTHER PECTATE LYASE 18-RELATED 126 243 IPR045032 GO:0030570
Pte13g00945 245 Gene3D - 108 238 IPR012334 -
Pte13g00945 245 PRINTS Pollen allergen Amb family signature 216 239 IPR018082 -
Pte13g00945 245 PRINTS Pollen allergen Amb family signature 185 209 IPR018082 -
Pte13g00945 245 PRINTS Pollen allergen Amb family signature 123 142 IPR018082 -
Pte13g00945 245 PRINTS Pollen allergen Amb family signature 145 164 IPR018082 -
Pte13g00945 245 SUPERFAMILY Pectin lyase-like 107 241 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00945 Pte-Chr13 8913407 8916325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00945 126 245 Polysaccharide Lyase AT4G22080 52.846 9.38e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00945 K01728 - qsu:112015873 176.022