Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00938 ATGGGAGTCCACGGTCTCTGGAATCTGCTCGCTCCCGTTGGCCGCCGTGTCTCCGTTGATACCCTCGCCGGGAAGCGGCTCGCTATCGATGCAAGCATATGGCTGGTGCAGTTTATGAAGGCGATGCGAGACGAGAAGGGAGAAATGATTCACAATGCTCACTTGATCGGATTCTTTCGTCGAATTTGCAAGCTCTTGTTTCTTCGGACTAAACCTGTCTTCGTCTTTGATGGTGGAACACCGGTTCTCAAGCGCCGCACTGTCATTGCGCGTCGTAGACACCGTGAAAACGCTCAAGCCAAAGTCCGCAAGACTGCAGAGAAATTGCTTCTCAATCATTTGAAGGCTATAAAGTTAAAGCAACTGGAAAATGATATTAAGAACCAGAGGAAGAGTACAGTCGATGCTAAAGTCTCAAAAAATGGTTCTTACAAGTTGGACTTACTTGGCAGTGAGTTGGGAAGGAGTGATCTGGTTATGGGTATGGGGGAGAAAAAAGAAAAACCAGGAGCTCCTATGGCAGCAGAAAAGGACCACAATACATGCAAATCTTCTATTGCTCTTGGAGAGAATGAGAGTGAAGATGAGGAGATAATCTTGCCAATAGATGCTGAAGTCGATCCAGCTGTGTTGGCTGCTTTGCCTCCATCAATGCAAGCTGTTCTTATTGAGCAGCATAAAAGGAAGAAAATGGAAGCAAAGGTAATGGATCATGAGAAACTTAATCAACAATGCTCAAAATATGCTAAAGGGAAGGAGATTCTGAAGGATGAATTTGGCATGGATAATGGTGATCCACAAAGATATGACCAGGCCAAAGTGGATGAAATGTTGGCAGCGTCAATTGCTGCAGAGGAAGGTGGACCCCTGCTAAATAATATGTCATCTTCGGGTGGTATTTTTACCAGTGATGAGGAGGAGGAGGACAATGATGATGAGGAGTTGATACTGCCAGCTTTGCAAGGTGGAGTTGATCCAGCTATTTTAGCTTCTTTGCCTCCATCGATACAACTTGATCTTCTTGTTCAAATGAGAGAAAGATTGATTGCAGAAAACAGACAGAAGTATCAGAAAGTCAAGAAGGAGCCTGCAAAATTTTCAGAGTTACAAATACAGGCTTATCTAAAAGCTGTTGCTTTTCGTCGGGAGATAGATGAAGTGCAGAAAACTGCAAGTGGGAGGGGTGTAGGTGGTGTGCAATCTTCTCGTATTGCATCTGAAGCCAACAGAGAGTTTATTTTCTCCTCATCATTTACTGGTGACAAACAGCAACTTATGACTACCAGAGGAGCAAGAGATGAAAATACGGATCAAACCAGTAATCTTTCTTCACTGGATCCAAAGTTTAACGTACCCTCGACTTCTGATTCCAATCCTGCAAGTCAAATAGCTCAAGATAAGTCTGCACAGGCTTTTGATGACAGCATTCATACATACTTTGACGAGAGTGGGCGTGTTAGAGTTAGTAGGTTAAGGGCTATGGGGATACGTATGACTCGTGACATACAGAGGAATTTGGATTTCATAAAAGAAATAGAACAAGAGGTGGAAAATGTCAACAAAAAATCGAGTGGAGACTTAGATCTTAATGTCAGGAATGATGGGAGACCTAGTTCTAGTGATGATCACTCTGATGCTTGTTCAGATAAGGAACCTGTGGAATTAATTGCAGAGGATGATGGAAATGTGCCACCCATAGTGCAGAATGACAACACTTCTATACAAATATCTTTTGAAGATAATGCCGAGGATAAATGTTTTGATGACGATGACCATTTGTTTGCTAGTTTAGTTGCAGGGAATACTGTATTGGTGTCTTGTGATAACAATCCACGGAAACAATCATGTAAATCTGATTCAGATTATGATTGGGAAGAAGGAATTATTGTAGGTAATTCTGGCAAGTCTTCACCTTATGTTAATAAGGAAATGAGGTTGCATGGTGAATTATGTAATGTTAATGATGAAAGTGATGTAGAGTGGGAGGAAGGGGTCTCTACTAGCCCTAGAGTTTCCCCTATATATGCATCTGAGACACGAAAAGCAGTTTCCAAGGGGCACATGGAGGAAGAGGCTGAATTACAAGAGGCAATAAGGAGAAGTATGGAGGACTCAGTGAGTCATATGCTTGAACTTCAACTTGAGACTTTAAATGGATCAATGTCTAACTCTATATTATTCCAAGATGGGAGATGTGAAGGTCTTGGAGAAAAGGCATTTAATTCTACAGTAAGTGTACAAGATAAAAGTGGCAAATCAAGCTGTGAAGTGGATGTGTCTCCCAGAAAAGAGATAAATCATGAAATTTCAGATGCATCTGAAAAGATGAAGAGTGAGGATGTGAATAATTTTATCTTAAATATCGACTTTCCTAAGTTGCAGTCAAAGTTGCCCATTGCATCTAATTCTAGTGATATGGGGATGATGATGAACAATAATCTGTCCGTGTCTCTTAGGGAGCAGTCATCTAGCGGGGCACATGAAAGCTCGGCCAACGAACTCCATCAGGTTTCAGGAGAACGATTGAGTGCCTCTAATTGTGGGAATTTGAACAAGGTTCTGGCTGTTTCAGGAGTGCTGTCTGATACATTCAATGAGGATGATGCATCTGCATGTCATGATATGTCTTTAGGGACTGACATCAATGTTTGCAGAAAAGATGATCCATTGTTTTCTACAACTTTGACCAGAAGAGATGATGTTGAAAGAAATATTCAGCAGAGCGTTACTAGTGGAAGTCAAGTAACATCTTGCAATACTATTAACGGTAATATCGGCAAAGATTCAATTGGAGTCCAACAAAATTTGGTGGAGGAATTCCCTGGAGCCAGTTTGGAAGAGGAAATGCTTATTCTTGATCAAGAACGTTTAAATTTAGGGACTGAGCAGAAAAAGTTTGAACGTGATGCAGAATCTGTCAATAGTGAATTGTTCACTGAATGTCAGGAGCTATTACAAATGTTTGGGCTGCCATATATTATTGCTCCTATGGAGGCAGAAGCTCAATGTGCTTATTTGGAACAGGCAAAACTTGTTGATGGTGTTGTTACTGATGACTCTGATGTTTTTTTGTTTGGGGCACGTAGTGTTTACAAAAATATATTTGATGATCGCAAGTATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGACTCACTAGAGAGCAGTTAATTCGTGTGGCCATGCTATTAGGAAGTGATTATACGGAAGGAATAAGTGGGATTGGCATTGTAAATGCTATAGAGGTCGTAAATGCATTTCCTGAGGAAGATGGCCTTCTGAAATTTAGGGAGTGGGTTGAGTCACCAGATCCCACAATTCTTGGGAAGTTTGACACGAGAAGTGGATCTAGCTCCCGGAAGAGAGGCTCAAAAGTAGATGACAGTGTAAATTCTGACCAGGAAGTTGCCGAAGCACAAACACACACTCAGACTGCAAGTGATAGCCAAGGAATGAAGCAAACATTTATGGATAAGCATAGAAATGTGAGCAAGAATTGGCACATTCCACCTTCGTTTCCCAGTGAAGCTGTTATTTCTGCTTATTATTCTCCACAAGTGGATAAGTCAACCGAGCTTTTCACATGGGGAAAGCCAGATCACCTTGTTCTTCGCAAATTGTGCTGGGAGAAGTTTGGTTGGACCAGTCAGAAGACAGATGAATTGCTGATACCTGTTCTAAAGGAATATAATAGACGCGAGACTCAATTACGGCTGGAAGCATTTTACACATTTAACGAAAGATTTGCAAAGATTCGTAGCAAAAGAATAAAAAAAGCTGTTAAAGGAATCACTGGGAACCAGTCTTCAGAATTGATTGTTGATGCTGCCCAAGAAACTTCCAATAGCAGAAAAAATAGAAGACTCGGCCCTGATGAATTTGGGGACAAGTCCGGGACTTCACAAGGAACAGGGAAGAAGGTGAAAGTGCAGACATCAAGGAAAAGGAAGAGCTCTGCAGATTCAGGGAAGAATGTCAAAGATGTGAGTTCATCTCAGTTGGATATTCAAGCAGGTACTCATGCAGAGGAGCAAAGATTCAGAAGGCCGTGTCTGAGAGGGAATCGAAAAGGGGGAAGCAGAGGGAAAGGTGGCAGCAGAGGTAGGGGATTTCAGAAGAAGGGTGTGGGTGGTACTGCCAATGAACTTTGTCAAAACACAGCATCTGAGGTTTCTGAGACTGACAGTGACTCAGATGAAGTCCAAGTGCAGCAGTGGAAAGGACCAGAGTTAGTTCGAAGGTCAACTCGTTTGCGGAAACCTGTGGTGTACTCTATGAATGACTTGGAGAATGGTGATACGGATAATTCTTCTGAGCTAAAGTACAAATCACTTTCCGAAGAAGCAGATAAACAAGAGTCACAAGACCTCGATCAAGTTGAGTCGATGTGCCTCGTTTCGGACCACCTGCTTTCCACAAATATTGCTTCAGGGAAGGATTTGCTCAGAGACTATCCTGAAGTAGGAGTTAGGTTTCACAATGCCGTAGGTAAAATTGACAGAGCTGGGGAAGAAGGTTGCGGTGAACCTTCTTTGGAGACAGAGTCTTCTATCAACTATCTTAAAGCGGGGGGTGGATTTTGCGTTGATGTTGGGAATGAAGGAAATGAAGATGGCACAACTGATATCCCTTCTATGGCAGAAGTGGAAGGAACGTTAGTGCTTTCGCATATGCCTAATGTTACGGACGAAGTGGATGGTAATAAATTACGTGATATGGAGTCTAATTTCAACTTTCCGAACCCCAAGAATGATACAAATCCCTCCTTTATATGCGTGTCATCACCAAAGGACACTGACGATGAACGCAAGAACTTGACGGGAGCACTAAGGGTCATGCCAAACTTGAAAAGGAAGAGGAGAAAGACCTGA 4881 0.422 MGVHGLWNLLAPVGRRVSVDTLAGKRLAIDASIWLVQFMKAMRDEKGEMIHNAHLIGFFRRICKLLFLRTKPVFVFDGGTPVLKRRTVIARRRHRENAQAKVRKTAEKLLLNHLKAIKLKQLENDIKNQRKSTVDAKVSKNGSYKLDLLGSELGRSDLVMGMGEKKEKPGAPMAAEKDHNTCKSSIALGENESEDEEIILPIDAEVDPAVLAALPPSMQAVLIEQHKRKKMEAKVMDHEKLNQQCSKYAKGKEILKDEFGMDNGDPQRYDQAKVDEMLAASIAAEEGGPLLNNMSSSGGIFTSDEEEEDNDDEELILPALQGGVDPAILASLPPSIQLDLLVQMRERLIAENRQKYQKVKKEPAKFSELQIQAYLKAVAFRREIDEVQKTASGRGVGGVQSSRIASEANREFIFSSSFTGDKQQLMTTRGARDENTDQTSNLSSLDPKFNVPSTSDSNPASQIAQDKSAQAFDDSIHTYFDESGRVRVSRLRAMGIRMTRDIQRNLDFIKEIEQEVENVNKKSSGDLDLNVRNDGRPSSSDDHSDACSDKEPVELIAEDDGNVPPIVQNDNTSIQISFEDNAEDKCFDDDDHLFASLVAGNTVLVSCDNNPRKQSCKSDSDYDWEEGIIVGNSGKSSPYVNKEMRLHGELCNVNDESDVEWEEGVSTSPRVSPIYASETRKAVSKGHMEEEAELQEAIRRSMEDSVSHMLELQLETLNGSMSNSILFQDGRCEGLGEKAFNSTVSVQDKSGKSSCEVDVSPRKEINHEISDASEKMKSEDVNNFILNIDFPKLQSKLPIASNSSDMGMMMNNNLSVSLREQSSSGAHESSANELHQVSGERLSASNCGNLNKVLAVSGVLSDTFNEDDASACHDMSLGTDINVCRKDDPLFSTTLTRRDDVERNIQQSVTSGSQVTSCNTINGNIGKDSIGVQQNLVEEFPGASLEEEMLILDQERLNLGTEQKKFERDAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLEQAKLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREQLIRVAMLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLLKFREWVESPDPTILGKFDTRSGSSSRKRGSKVDDSVNSDQEVAEAQTHTQTASDSQGMKQTFMDKHRNVSKNWHIPPSFPSEAVISAYYSPQVDKSTELFTWGKPDHLVLRKLCWEKFGWTSQKTDELLIPVLKEYNRRETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIVDAAQETSNSRKNRRLGPDEFGDKSGTSQGTGKKVKVQTSRKRKSSADSGKNVKDVSSSQLDIQAGTHAEEQRFRRPCLRGNRKGGSRGKGGSRGRGFQKKGVGGTANELCQNTASEVSETDSDSDEVQVQQWKGPELVRRSTRLRKPVVYSMNDLENGDTDNSSELKYKSLSEEADKQESQDLDQVESMCLVSDHLLSTNIASGKDLLRDYPEVGVRFHNAVGKIDRAGEEGCGEPSLETESSINYLKAGGGFCVDVGNEGNEDGTTDIPSMAEVEGTLVLSHMPNVTDEVDGNKLRDMESNFNFPNPKNDTNPSFICVSSPKDTDDERKNLTGALRVMPNLKRKRRKT* 1627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00938 1626 SMART HhH_4 1057 1090 IPR008918 GO:0003677|GO:0003824
Pte13g00938 1626 CDD H3TH_XPG 1058 1192 - -
Pte13g00938 1626 MobiDBLite consensus disorder prediction 424 468 - -
Pte13g00938 1626 Gene3D - 1 145 - -
Pte13g00938 1626 FunFam DNA repair protein UVH3 1 145 - -
Pte13g00938 1626 MobiDBLite consensus disorder prediction 1113 1137 - -
Pte13g00938 1626 Gene3D - 937 1054 - -
Pte13g00938 1626 MobiDBLite consensus disorder prediction 818 837 - -
Pte13g00938 1626 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 238 - -
Pte13g00938 1626 MobiDBLite consensus disorder prediction 1118 1135 - -
Pte13g00938 1626 SUPERFAMILY PIN domain-like 2 1070 IPR029060 -
Pte13g00938 1626 CDD PIN_XPG_RAD2 972 1056 - -
Pte13g00938 1626 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pte13g00938 1626 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pte13g00938 1626 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pte13g00938 1626 Pfam XPG I-region 989 1070 IPR006086 GO:0004518
Pte13g00938 1626 MobiDBLite consensus disorder prediction 1327 1342 - -
Pte13g00938 1626 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Pte13g00938 1626 Gene3D - 195 236 - -
Pte13g00938 1626 Gene3D - 1055 1111 - -
Pte13g00938 1626 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pte13g00938 1626 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Pte13g00938 1626 CDD PIN_XPG_RAD2 2 92 - -
Pte13g00938 1626 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1055 1254 IPR036279 -
Pte13g00938 1626 MobiDBLite consensus disorder prediction 1281 1411 - -
Pte13g00938 1626 MobiDBLite consensus disorder prediction 535 549 - -
Pte13g00938 1626 MobiDBLite consensus disorder prediction 523 549 - -
Pte13g00938 1626 ProSitePatterns XPG protein signature 2. 989 1003 IPR019974 GO:0016788
Pte13g00938 1626 FunFam DNA repair protein UVH3 934 1054 - -
Pte13g00938 1626 FunFam DNA repair protein UVH3 1055 1112 - -
Pte13g00938 1626 SMART xpgn3 1 98 IPR006085 GO:0004518
Pte13g00938 1626 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Pte13g00938 1626 MobiDBLite consensus disorder prediction 1382 1406 - -
Pte13g00938 1626 Pfam Ubiquitin binding region 203 226 IPR025527 -
Pte13g00938 1626 Pfam Ubiquitin binding region 321 348 IPR025527 -
Pte13g00938 1626 SMART xpgineu 986 1055 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00938 Pte-Chr13 8557562 8569044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00938 965 1087 Core DNA Replication Machinery Family AT5G26680 34.921 1.10e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00938 K10846 - qsu:111986873 1315.06