Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00936 ATGGGTGTGACCACTTTGTGTGGGATGTCAAAAAGCAAAGATCTTAAGTGGTGTTCAGAGCGAACACATCTGAAAATGTATTGGAATCGATATCAAATCCAGTTGAAAAATGAAAATGTGAACTATCCACCGCCTCTTCCTCCTACTCCTTCAGATGCATTTGCTGGTGGTTTGCACAACGACTCCCTACATCCTTCATCTTCTAGTCTTAAAATTAGTCCTGCTGTTCTTTTCATCATCGTGATTCTAGCTGTTTTGTTTTTCATCTCTGGTCTGCTTCATCTCCTCGTAAGATTTCTAGTTAGGCATCCATCTTCAGCATCTTCTCAATCTAATAGGTACCCCGAAGTTTCTACCTCAGATGCTCTTCAGAGACAACTTCAACAGTTATTTCATCTTCATGACTCTGGATTAGATCAAGCTTTCATTGACGCACTTCCTGTTTTCCAGTACAGAGAAATTGCGGGTCTAAAAGAGCCATTTGATTGTGCAGTCTGTCTCTGTGAGTTTTCTGAGAAGGACAAGCTCAGATTGCTTCCGATGTGCAGCCATGCTTTTCATATTAATTGTATAGACACTTGGCTCTTGTCCAACTCCACTTGCCCTCTTTGTAGAGGCACCCTTTTCACTCCAGAGTTTTCTGTTGAGAACCCAATTTTTGAGTTTGTTGATTCTGGAGAAGAAGATGGATGTCCTGTTAATAGAGAAAGTAGATGTCCTCTTAGACAAAAAACAGTGGAGACTGAAGAAATTGTTGTTGAAAAGGGGGTTTTACCTGTTAGACTTGGTAAATTTCGGAAATTAAATGAGGATAAGGGGGATCCTGAAGGAGGAGGAGAAACTAGTAGCAGTAATTTAGATGCAAGGAGGTGTTTTTCATTGGGATCTTATCAATATGTGCTTGGCAATTCAAACCTAAGAATTGCCTTGAGCCATGAGAGGAAGGGTTGTGATAATAAGCCTACTGATGGGACAGAACAAACGGAGAAGGTCTCAGGCGCAAATGAAATGGAAGCCAAGAAGATTAGCTCTGTAACTAAAGGTGACAGCTATTCTGTGTCCAAAATCTGGTTGTGGTCGAAGAAGGGCAAATATTCAAGTTCTCCTGATGCTCATATGGGTTTACCATCTTCACTTGCTTCGGAGCTGCCCTGGTTGAAGAAAACACAAGGGACATGA 1179 0.4139 MGVTTLCGMSKSKDLKWCSERTHLKMYWNRYQIQLKNENVNYPPPLPPTPSDAFAGGLHNDSLHPSSSSLKISPAVLFIIVILAVLFFISGLLHLLVRFLVRHPSSASSQSNRYPEVSTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYREIAGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLFTPEFSVENPIFEFVDSGEEDGCPVNRESRCPLRQKTVETEEIVVEKGVLPVRLGKFRKLNEDKGDPEGGGETSSSNLDARRCFSLGSYQYVLGNSNLRIALSHERKGCDNKPTDGTEQTEKVSGANEMEAKKISSVTKGDSYSVSKIWLWSKKGKYSSSPDAHMGLPSSLASELPWLKKTQGT* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00936 392 Pfam Ring finger domain 162 205 IPR001841 -
Pte13g00936 392 SUPERFAMILY RING/U-box 142 211 - -
Pte13g00936 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 67 357 - -
Pte13g00936 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 210 IPR013083 -
Pte13g00936 392 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Pte13g00936 392 SMART ring_2 163 204 IPR001841 -
Pte13g00936 392 MobiDBLite consensus disorder prediction 363 392 - -
Pte13g00936 392 FunFam RING-H2 finger protein ATL46 125 210 - -
Pte13g00936 392 CDD RING-H2_EL5-like 162 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00936 Pte-Chr13 8513414 8515693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00936 71 364 C3H Transcription Factor Family AT2G18650 42.724 3.04e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00936 - - tcc:18600728 513.842