Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00930 ATGGAGACCGGTCATTTTTTCTTCAACCCGTCAACTTGCCAAGAAAACGTGCTCTTCCTCGGGAATGGTGATTCTGTTTTTCGAGGAGGAAGGTCGACGATGAGAATGGAAGACAGCTCAAAGAAGCGACCGTGTTTCAGCTCAGCGGAGGAACTGTTTGATGAGGAATACTACGATGAACAGTTTCCAGAGAAGAAGCGCCGCCTTACGCCGGAGCAGGTGCTTCTGCTGGAGAAGAGCTTTGAGGCAGAAAACAAACTGGAGCCAGAGCGCAAGACCCAGCTAGCTAAGAAATTAGGACTGCCATCAAGGCAGGTGGCTGTATGGTTCCAGAATCGCAGGGCTAGGTGGAAGACAAAGCAACTTGAAAGGGATTATGATCTTCTCAAATCTTCATATGACTCCCTACGTGCCAATTATGATTCTCTTGTCAAGGAGAACGAGAAGCTTAAATCTGAGGTGGTATCGTTAAATGAGAAACTGCAAGGAGAGGCGGTGCAAAGTCCAGTATCAGCTGACAAATCTGAGTCACATGGTATGGAGACGGCCCAAGTATCAGCCCTCCAATTCAGCATGAAGGTGGAGGACCGCGTCAGTTGTGGTAGTGGCGGGGGGTGCTGTGGTAGATGA 630 0.4921 METGHFFFNPSTCQENVLFLGNGDSVFRGGRSTMRMEDSSKKRPCFSSAEELFDEEYYDEQFPEKKRRLTPEQVLLLEKSFEAENKLEPERKTQLAKKLGLPSRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLRANYDSLVKENEKLKSEVVSLNEKLQGEAVQSPVSADKSESHGMETAQVSALQFSMKVEDRVSCGSGGGCCGR* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00930 209 SUPERFAMILY Homeodomain-like 58 122 IPR009057 -
Pte13g00930 209 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Pte13g00930 209 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Pte13g00930 209 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Pte13g00930 209 SMART HOX_1 63 124 IPR001356 GO:0003677
Pte13g00930 209 FunFam homeobox-leucine zipper protein ATHB-6-like 68 114 - -
Pte13g00930 209 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 178 IPR045224 GO:0003700
Pte13g00930 209 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Pte13g00930 209 CDD homeodomain 65 121 IPR001356 GO:0003677
Pte13g00930 209 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Pte13g00930 209 Gene3D - 59 126 - -
Pte13g00930 209 Coils Coil 119 167 - -
Pte13g00930 209 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00930 Pte-Chr13 8228646 8331859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00930 1 207 Homeobox Transcription Factor Family AT3G01470 61.321 1.26e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte13g00930 Homeodomain 1.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00930 K09338 - qsa:O6P43_008987 289.271