Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00925 ATGAAGTCTCAAGATGGTCTCCAGTTCATTGGCCACAAACCCAAATGGGGTTTTGGAAAAGAAGTATCACCAACAGAGTATTTGACAGAAGCTGTAGCTCCTAGGCGCAAATGGAAGATTTTCAATAGGTCATCGACAGCTCTACCATTCAAGCCTCACACTAAGCCAAAGTCACCACCAAAGGAATTTCTTTGTCCTTTGTCTGGTTCTCTCATGGCTGACCCTGTGATCGTCTCATCAGGTCATACCTTTGAGAGAAACTCCGTTCAAGCCTGTAAAAACTTGGGTTTTACGCCAACACTCAATGACGGCTCCTCACCTGATTTGTCTACATTAATCCCCAACCTTGCTCTCAAATCCGCCATACTCAATTGGTGCAAGATCACTTCCATTGACCCGCCCAACCCTCCGGATTCCAGTTCTTCTGAGAGCCTCGTCTGTAAACTCATGACCCAGAATGCCGACCAAAATGCATGTGAACCCCAGAAAGGAGTAAGCTTTGAATCCGAAAAGGAACTCATTGAAGCTATCAAGGAAAACTCACAAGTGAATTTCACTCACGCAGCCACAGAAATAGGCCCCCGAAGGAATCATTCCTACACTAGCTCAGAAGAATCAGTGGGTACCTCTGTTTCCACTCCTCCTCTGCAACTATCAACTAGACCCAGTTGCTATTCTTCTCCATCTTCCTCAGAGATTGAGACGATGGATCCTATATCAGCTGAAGAAGAAGAAATATTGTCGAAATTAAAAGGCCCACAATTGTCTGAGATCGAAGAAGCTGTGATTTCACTGAGAAAGCTTACAAAGACCAGAGAGGACACTAGGGTTCAACTCTGTACGCCCAGGTTACTCTCAGCCCTACGTCCTTTGATCCATTCCAAGTACACAACCATTCAGGTGAACTCAGTCGCAGCTCTGGTGAATCTCTCGTTGGATAAGGCAAACAAGAACAGAATCGTGCGCTCAGGATTGGTTCCTCCGCTGATTGATGTGTTGAGGGGTGGATACCCTGAGGCGCAGGAACACGCTTGTGGTGCACTCTTCAGCTTAGCCCTTGATGATGACAACAAGACTGCGATTGGTGTCTTGGGAGCTCTGCCGCCGTTGATTCATTTGCTCCGATCTGTTAGTGAGCGAACTCGACATGACTCGGCACTCGCTCTGTATCATCTCTCACTGGTCCAGAGCAACAGGACGAAGTTGATCAAGCTCGGATCGGTTCCTCTTCTAATGGGCATGGCAAAGTCGGGTCACATGATGGGTCAGATACTGGTCATTTTAGGCAACTTAGCTGCTGGTGTGGATGGACGATCTACATTGTTAGATGCGGGTGCAGTGGAGTACTTGGTCGGGTTTTTGGACGGGAACGAATCGGTGTCCGGGTCAACTCGTGAGAGCTGTGTTGCCGTGTTGTATGCATTGAGTCGTGGGGGATTGAGATTCAAGGCATTGGCTAGGGCGGCCGGACTAGTGGAAGTGTTGAGGAAGTTTGAGAAAGTAGGAAGTGAGAGAGCAAGAGAGAAAGTCAGAGGCATATTGGAGATGATGAGAGCCACAGAAGAGGAGGAAGAAGAAATCGATTGGGAGGAAATTCTTGACTCGGGATTCAGGAGTCGAACTCGGGATGAATCACGTGTTAACTCGTCCGAGTTTTGA 1659 0.478 MKSQDGLQFIGHKPKWGFGKEVSPTEYLTEAVAPRRKWKIFNRSSTALPFKPHTKPKSPPKEFLCPLSGSLMADPVIVSSGHTFERNSVQACKNLGFTPTLNDGSSPDLSTLIPNLALKSAILNWCKITSIDPPNPPDSSSSESLVCKLMTQNADQNACEPQKGVSFESEKELIEAIKENSQVNFTHAATEIGPRRNHSYTSSEESVGTSVSTPPLQLSTRPSCYSSPSSSEIETMDPISAEEEEILSKLKGPQLSEIEEAVISLRKLTKTREDTRVQLCTPRLLSALRPLIHSKYTTIQVNSVAALVNLSLDKANKNRIVRSGLVPPLIDVLRGGYPEAQEHACGALFSLALDDDNKTAIGVLGALPPLIHLLRSVSERTRHDSALALYHLSLVQSNRTKLIKLGSVPLLMGMAKSGHMMGQILVILGNLAAGVDGRSTLLDAGAVEYLVGFLDGNESVSGSTRESCVAVLYALSRGGLRFKALARAAGLVEVLRKFEKVGSERAREKVRGILEMMRATEEEEEEIDWEEILDSGFRSRTRDESRVNSSEF* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00925 552 MobiDBLite consensus disorder prediction 191 235 - -
Pte13g00925 552 PANTHER U BOX DOMAIN-CONTAINING 26 518 - -
Pte13g00925 552 Coils Coil 503 523 - -
Pte13g00925 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 407 IPR000225 GO:0005515
Pte13g00925 552 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Pte13g00925 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Pte13g00925 552 Pfam Armadillo/beta-catenin-like repeat 354 393 IPR000225 GO:0005515
Pte13g00925 552 Pfam Armadillo/beta-catenin-like repeat 315 352 IPR000225 GO:0005515
Pte13g00925 552 SUPERFAMILY RING/U-box 56 134 - -
Pte13g00925 552 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Pte13g00925 552 SUPERFAMILY ARM repeat 246 516 IPR016024 -
Pte13g00925 552 SMART arm_5 272 312 IPR000225 GO:0005515
Pte13g00925 552 SMART arm_5 434 477 IPR000225 GO:0005515
Pte13g00925 552 SMART arm_5 395 433 IPR000225 GO:0005515
Pte13g00925 552 SMART arm_5 354 394 IPR000225 GO:0005515
Pte13g00925 552 SMART arm_5 313 353 IPR000225 GO:0005515
Pte13g00925 552 MobiDBLite consensus disorder prediction 195 235 - -
Pte13g00925 552 FunFam RING-type E3 ubiquitin transferase 241 517 - -
Pte13g00925 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 361 IPR000225 GO:0005515
Pte13g00925 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 130 IPR013083 -
Pte13g00925 552 Gene3D - 240 516 IPR011989 -
Pte13g00925 552 Pfam U-box domain 60 127 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00925 Pte-Chr13 8112926 8115650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00925 30 553 U-box Gene Family AT5G40140 54.275 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00925 - - qsa:O6P43_004571 688.337