Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00919 ATGGGATCGAAACGAAAACAGAAATCGAAATCTAGTCAACCCGGAAAGAAGCAACAGCTAGAACAAGAACCACAACGGCTACCAGTTCCACAACCTGAGTACGAAGAGGTCGAGGAAGAAGTTGAAGAGGTAGAATTCGAGGAAGAAGAAGTAGAAGTAGAAGCAGGACATGATGGTAATGAGGATGATGATGACAATGAAGAAGAAGATGAATATGAGGAGGATGAAGATGACGACGCACAGCAAAACCCTAATTCTGATGGACGGATAGTGAAGTCGGCTGCTACAGTTCTTAATGAAGACGAAGACGACGAGCCCGTATCGACACTTCTTGAGCCTTTTAGTAAGGATCAACTCGTGAATTTGCTCTGCGAATTAGCGGGTAAGCACCGTCAAGTGGCGGATCGGATCCGGAGTATGGCTGACGAAGACCCGGTTCACCGGAAGATATTTGTTCATGGTCTTGGATGGGATACGAATGCCGAAACCCTAATTGATGTCTTTAAGCAGTATGGTGAGATCGAGGATTGTAAGGCGGTGACTGATAAGGTATCTGGAAAGTCTAAAGGATATGCCTTTATTCTGTTCAAGACGAGAAGGGGAGCTCGTAATGCTTTGAAGCAGCCTCAGAAAAAAATTGGGCATCGGATGACTGCTTGTCAGTTGGCTTCCCTTGGTCCAGTCCAGACGCCGCATAAGTCGTCAGTGCCACCGGCTGATACTGCTATTGTTACTGGTACGGCACATAGCCGATCGGCATCTGAATATACCCTAAGAAAAATATATGTGAGCAACGTTGGAGCGGATTTGGATCCAGAAAAGTTAAAGAATTTCTTTTCAATGTTCGGAGAAATCGAGGATGGGCCATTGGGGCTCGATAAGTTGACTGGGAAGCCTAAAGGGTTTTGTTTGTTTCTGTACAAGACAGTAGAAAGTGCTAAGAAGGCCTTGGAAGAGCCACATAAGAATTTCGAAGGCCATATTTTGCACTGTCAGAAAGCTATTGATGGTCCGAAACAAGGGAAGCCTCAGTTTCAGCAGAATAACTCTCAGTTCCAGAGAAATCAGAATGTAGGTTTTGGTGGGGGAGGAGTTGCTACAACTTCTGGACCAGGGCAATTGATGCCTGCAGCAGCATCTGGTATTGGGTTTAACCAGGGGGTTGCAGCTGCGCAAACTTTTCAGAACCCAGCCCTGCAACAGGCATTGACTACACTGCTTGCTACGCAGGGCGCGGGGTTGGGGCTCAATAATTTGTTGGGAGCTATTGGATCAGCTGCTACTGTCAATGCAGGTCTTCCTGGTGTTACACATGGCGTGCAGCCCAGTTATGGTGCTCAAGCGGCCGGAGTCATTGGCGGCTATGCAGGTCAGAGTGCATTACAGGGTGGATATCCAAATCAACAGATGGGTCAAAGTGGCGCAGGGAAGGGGCTGTATAATGCTGGGCAATATGCGCCTTACACCGGTCGATAA 1476 0.4749 MGSKRKQKSKSSQPGKKQQLEQEPQRLPVPQPEYEEVEEEVEEVEFEEEEVEVEAGHDGNEDDDDNEEEDEYEEDEDDDAQQNPNSDGRIVKSAATVLNEDEDDEPVSTLLEPFSKDQLVNLLCELAGKHRQVADRIRSMADEDPVHRKIFVHGLGWDTNAETLIDVFKQYGEIEDCKAVTDKVSGKSKGYAFILFKTRRGARNALKQPQKKIGHRMTACQLASLGPVQTPHKSSVPPADTAIVTGTAHSRSASEYTLRKIYVSNVGADLDPEKLKNFFSMFGEIEDGPLGLDKLTGKPKGFCLFLYKTVESAKKALEEPHKNFEGHILHCQKAIDGPKQGKPQFQQNNSQFQRNQNVGFGGGGVATTSGPGQLMPAAASGIGFNQGVAAAQTFQNPALQQALTTLLATQGAGLGLNNLLGAIGSAATVNAGLPGVTHGVQPSYGAQAAGVIGGYAGQSALQGGYPNQQMGQSGAGKGLYNAGQYAPYTGR* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00919 491 Gene3D - 139 226 IPR012677 -
Pte13g00919 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 241 IPR000504 GO:0003723
Pte13g00919 491 SUPERFAMILY RNA-binding domain, RBD 139 232 IPR035979 GO:0003676
Pte13g00919 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 343 IPR000504 GO:0003723
Pte13g00919 491 SMART rrm1_1 260 332 IPR000504 GO:0003723
Pte13g00919 491 SMART rrm1_1 149 221 IPR000504 GO:0003723
Pte13g00919 491 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 26 339 - -
Pte13g00919 491 SUPERFAMILY RNA-binding domain, RBD 253 363 IPR035979 GO:0003676
Pte13g00919 491 Gene3D - 244 369 IPR012677 -
Pte13g00919 491 MobiDBLite consensus disorder prediction 34 81 - -
Pte13g00919 491 MobiDBLite consensus disorder prediction 1 89 - -
Pte13g00919 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 329 IPR000504 GO:0003723
Pte13g00919 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 212 IPR000504 GO:0003723
Pte13g00919 491 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00919 Pte-Chr13 8037628 8041477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00919 259 344 C2H2 Transcription Factor Family AT2G19380 39.080 7.88e-11 62.4