Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00909 ATGGAGCAAGTGACTCCTACACCTGATACTGTGGATAAGTCTAGGGTTTTGAATGTTAAGCCATTGCGAACCCTTCATCCTGTCTTTCCATCAACACCTCCTAATTTCTCATCAGCGACCCAAAGTAGTTCTCCCTTTGTTTCTGTTGGACCATCTGGTCCGTTTCCACCTGGAACTGCTCCCTTTTATCCATTCTTCGCTCCACCCCATTCTCAACAGGATGCACAGACTTCAGGTGGCGTATCATTTGGTATCCACACTCCAATATCTAATGCTGTTCCTATCAATTCTTTTAGAACAGGAGCACGATCAGCAGGTAGAGCAGGAGTCACTCCATCTGAAAATGGAGGTTCAAGTTCCTCGAGGAGAGCAACTAAAAGCTGTGGGATGTCACGAAGTGGATTTACTGATGAAGATGGATATGATAATGAAATGCAGGATACAGAAAACAAGACCAGGTCTGAGAGGCTACGTAGAAGGAGTCAGAAGAGGACAAGGGCTGGGCAGGACCCTTGTTTGACCTCGCCTGAATATGATGCAGAGGCAGTGGTTAATGATGCACTTGCAATGGTGAATCCTGCTGTCTTTGACTTGTTAAAACAAGATGATTGTGGAAAGGAGGGAGTTGGGTGTACACTTATGATTTATGAATTTCTAAGGAAGCGGATCTCGCAGATCGAAGAGACAAAGGAAGCAATTCCTGGAGTGACAAAGCGTCCTGATCTAAAAGCAGGTGCATCTATGATGACAAGAGGAATCCGTGCAAATTCAAAGAAGCGAATTGGAACTGTGCCTGGTGTTGACATTGGGGACATCTTCTTTTTAAGGTTTGAATTATGTTTGGTGGGATTACATGCTCCATCTATGGCTGGTATTGACTACCTGAGTGTCAAAATCAATGTGGAGGATGAGCCGTTAGCAGTCAGCATTGTCTCCTCCGGGGGATATGATGACAGTGTGGAGGATCCAGATGTATTGATTTATAGTGGCCAAGGTGGTACTAACCGCAAAGATAAAGAAGGGAAGGATCAGAAACTTGAAAGGGGGAATCTAGCTTTGGAGAAAAGCTTGCATCGGGGAAATGATGTGAGAGTAATTCGGGGTGTAAAGGATATAGTAAATCCAATTTCAAGGATTTATATATATGATGGAATTTATAAAATCCAGGATTCTTGGGTGGAAAAAACCAAGTCTGGTTACAATGTATTTAAATATAAGTTAGTCAGGTTACCAGGTCAGCCTGAAGCATTTATGACTTGGAAATCTATTCAGCAATGGAGTGAGACACCTTCTTCAAGGACAGGAGTTATTTTGCCTGATCTTACTTCAGGAGCAGAAAATTTGCCTGTTTGTCTTGTGAATGAAGTTGATAATGAGAAGGGCCCTGCATATTTTACTTACACGCCCGGTCTTAAGTATTCAAAGGCTGAGAATACTGGTGAGCCTTCCAGTGGATGTGCTTGCCTACGTGGCTGTCAACCTAATCGTTCAAATTGTGCTTGTATCCAGAAGAATGGAGGTTATCTACCATATGCTGCCAATGGAAGTCTTATGAACCAAAAATCCTTGATATATGAGTGCGGTCCTTCCTGTCAATGCCCACCTAATTGTCGGAATCGTGTTTCTCAAGGTGGCCTCAGAATTCGTCTCGAGGTGTTCAGAACTAAGGAGAAAGGCTGGGGTCTTAGGTCGTGGGATCCCATTCGTGCTGGGACTTTCATAAGTGAATATGCAGGGGAAGTAATTGACAATGCTAAGGCAGTGGAGCTTGGTGGTAAAAATGAGGATGGCTATGTTTTTGATTCTACCCGTACTTTTCCACAGCTGGAAATTTTTCCTGATGATTCTGAGCGACTGAAAACCCCTTTTCCCCTGCTTATTAATGCAAAAGATGTAGGCAATGTGGCTCGCTTTATGAACCATAGTTGTTCCCCTAATGTATTTTGGCTGCCAGTCCAACGCGAAAATAAAAATGAGCCTGATCTCCATGTTGCATTTTATGCACTCCGACATATTCCTCCAATGGTGGAGTTGACATACGATTATGGAATTGTACCACCTTTGGAAGCACGCTTGACAAAGAAGAAATGCTTGTGTTGTTCACTCAAATGCAAGGGTTTCTTTTATTAA 2130 0.4315 MEQVTPTPDTVDKSRVLNVKPLRTLHPVFPSTPPNFSSATQSSSPFVSVGPSGPFPPGTAPFYPFFAPPHSQQDAQTSGGVSFGIHTPISNAVPINSFRTGARSAGRAGVTPSENGGSSSSRRATKSCGMSRSGFTDEDGYDNEMQDTENKTRSERLRRRSQKRTRAGQDPCLTSPEYDAEAVVNDALAMVNPAVFDLLKQDDCGKEGVGCTLMIYEFLRKRISQIEETKEAIPGVTKRPDLKAGASMMTRGIRANSKKRIGTVPGVDIGDIFFLRFELCLVGLHAPSMAGIDYLSVKINVEDEPLAVSIVSSGGYDDSVEDPDVLIYSGQGGTNRKDKEGKDQKLERGNLALEKSLHRGNDVRVIRGVKDIVNPISRIYIYDGIYKIQDSWVEKTKSGYNVFKYKLVRLPGQPEAFMTWKSIQQWSETPSSRTGVILPDLTSGAENLPVCLVNEVDNEKGPAYFTYTPGLKYSKAENTGEPSSGCACLRGCQPNRSNCACIQKNGGYLPYAANGSLMNQKSLIYECGPSCQCPPNCRNRVSQGGLRIRLEVFRTKEKGWGLRSWDPIRAGTFISEYAGEVIDNAKAVELGGKNEDGYVFDSTRTFPQLEIFPDDSERLKTPFPLLINAKDVGNVARFMNHSCSPNVFWLPVQRENKNEPDLHVAFYALRHIPPMVELTYDYGIVPPLEARLTKKKCLCCSLKCKGFFY* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00909 709 Pfam Pre-SET motif 442 540 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte13g00909 709 Gene3D - 245 428 IPR036987 -
Pte13g00909 709 ProSiteProfiles YDG domain profile. 262 409 IPR003105 -
Pte13g00909 709 Gene3D SET domain 430 709 IPR046341 -
Pte13g00909 709 SMART set_7 548 689 IPR001214 GO:0005515
Pte13g00909 709 Pfam SET domain 559 683 IPR001214 GO:0005515
Pte13g00909 709 SUPERFAMILY PUA domain-like 245 429 IPR015947 -
Pte13g00909 709 SUPERFAMILY SET domain 424 694 IPR046341 -
Pte13g00909 709 MobiDBLite consensus disorder prediction 103 174 - -
Pte13g00909 709 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 245 428 - -
Pte13g00909 709 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 119 704 - -
Pte13g00909 709 MobiDBLite consensus disorder prediction 111 132 - -
Pte13g00909 709 SMART G9a_1 257 413 IPR003105 -
Pte13g00909 709 ProSiteProfiles Pre-SET domain profile. 484 545 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte13g00909 709 ProSiteProfiles SET domain profile. 548 683 IPR001214 GO:0005515
Pte13g00909 709 SMART preset_2 438 532 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte13g00909 709 Pfam SAD/SRA domain 261 413 IPR003105 -
Pte13g00909 709 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 113 709 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00909 Pte-Chr13 7940424 7944597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00909 4 708 Su(var)3-9 homologs AT1G73100 46.260 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte13g00909 SAD_SRA 8.8e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00909 K24405 - gmx:100786650 876.7