Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00908 ATGAGTTCGACCTTCACTTCACGCCTTGCTCAATATACAACCCGTCTAGTCAACTCTTGCGCTGAACCCCACCAAACTCTCATTGGAGACCACTCCCAGCTCCTATGGGATGGAAATGTTGATAGTGCTAATGTTTCCGGTGTTTATGCAAAACCCTTTCTGATTTTGGACCTTGTGTGGAACATGGGTTTCGTTTTGGTCGCCGCTAGTGTGCTTTTGTCCACTTCTGCTGACCACCCGTCAACCCCTTTGAGGGTTTGGCTTTGTGGCTATGCGTTTCAGTCTATTTTTCATATGGGTTTTGTGTTATGTGAGTATAGAAAAAATACCGTCGATTCTCAGACAGCACAAAGTAGGCATTCGTCGTCTCAGAATAGGAGCAGGATTATGAAAAGGTTAGAGTCTGTCTACACTGTGATTTCATCAATCTGGTGGGTTGTTGGATTTTATTGGATTGTTATGGGTGGCCAAGCACTTCTGCAAGAGTGCCCTCGCCTTTACTGGTCAACAGTGGTCTTTCTTGCATTTGAAGTGTTCTTTATCGTCTTTTGCGTCGTAATAGCATGTACAGTTCTTTTCTGCATTGCCCCTGTTTTGCTATTTGCTTTTGCTTTGAGCATTGGAGAAGGTGCATCTGATGAGGAAATCAGTTCTCTTCCAAAGTACGTATTTCATCATTCGAATACACTGCTTACCTCTGATGATAAGAAACATGTTTACTCTTCTGGAATGGACTCGATCAACAGTATCAACAATCTCTCTCTTCAGCTAGAGGATTCTGATTGTTGTATCTGCCTTTCTCGATATGTTGACGGAGCAGAACTGTATCGCCTTCCATGCAATCATCTATTTCATTGTGGATGCATCAGCAGGTGGCTTTGTATAAAGGCAACCTGTCCTCTATGTAAAGCTAACATCCTTAGAGGCGACACATTAGTGTGA 942 0.4321 MSSTFTSRLAQYTTRLVNSCAEPHQTLIGDHSQLLWDGNVDSANVSGVYAKPFLILDLVWNMGFVLVAASVLLSTSADHPSTPLRVWLCGYAFQSIFHMGFVLCEYRKNTVDSQTAQSRHSSSQNRSRIMKRLESVYTVISSIWWVVGFYWIVMGGQALLQECPRLYWSTVVFLAFEVFFIVFCVVIACTVLFCIAPVLLFAFALSIGEGASDEEISSLPKYVFHHSNTLLTSDDKKHVYSSGMDSINSINNLSLQLEDSDCCICLSRYVDGAELYRLPCNHLFHCGCISRWLCIKATCPLCKANILRGDTLV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00908 313 Pfam Ring finger domain 261 303 IPR001841 -
Pte13g00908 313 PANTHER TARGET OF ERK KINASE MPK-1 48 307 - -
Pte13g00908 313 SMART ring_2 262 302 IPR001841 -
Pte13g00908 313 SUPERFAMILY RING/U-box 255 307 - -
Pte13g00908 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 310 IPR013083 -
Pte13g00908 313 ProSiteProfiles Zinc finger RING-type profile. 262 303 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00908 Pte-Chr13 7932800 7935580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00908 49 310 C3H Transcription Factor Family AT1G68070 46.209 6.19e-80 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00908 - - qsa:O6P43_009991 364.385