Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00904 ATGATGGCTAGTAGCAGAAACACTCATTGGTGTTATAGATGCAGGAGATCATTTCTTTTAAGAGGGACAGCTGTAGTTTGTCCTGAATGCAATGGAGGTTTTGTTCAAGAGCTTGATGACATGGTGCATGTTCGGCCACTAGATTTCTTTGGATTAGATAATGGCGAAGAACAGGATAGACAGATCAGATTTTTGTCAGAATTGATAAGGCACCGACTAGCAGATAGGGGCAGCCATCGTGATATTAGGACAAGGTCTGGTTCTATTACTGACCATAACCCGGGATTTGGTCCTTTATTGATCTTTGGTGGCCAGATTCCTTTTAGATTATCTGGAAATAGTGCCTTGGAGACTCTCCTAGATGGTGCTCCTGGAATTGGTGTAACACGGGGCAGTACAGGTGATTATTTCATAGGTCCTGGTTTGGAAGAACTATTTGAGCAGCTTTCTGTTAATGATCGACGAGGCCCTCCTCCAGCTTCCAGAACCTCAATAGATGCAATGGCTATGATTAAGATCACGCAGAGGCATCTTCGTTCAGATTCACATTGTCCAGTTTGCCAAGACAAATTTGAGCTGGGATCTGAAGCAAGGCAAATGCCTTGCAACCATATATATCACTCGGATTGTATTGTTCCATGGCTTGTGCAACATAACTCTTGTCCCGTATGCCGGCAGGAATTGCCACCTCAAAATCTGAGCAGCAGTGGCAGTTCAGATAGTCCTTCCTCCAGTGTAAGGGAGAGCCAAGGAAGGCGAAATCCATTCTCCTACCTATGGCCTTTCCGCTCATCCAGTTCTGGGGATAACAATGATGAAGCAGCTGGAAGTAGCTTACCTACCATCCGTGGCAACAACAATGAAAGAGAGTACTATGGTTGGCCTTTTAATGATTACTGA 900 0.4467 MMASSRNTHWCYRCRRSFLLRGTAVVCPECNGGFVQELDDMVHVRPLDFFGLDNGEEQDRQIRFLSELIRHRLADRGSHRDIRTRSGSITDHNPGFGPLLIFGGQIPFRLSGNSALETLLDGAPGIGVTRGSTGDYFIGPGLEELFEQLSVNDRRGPPPASRTSIDAMAMIKITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPPQNLSSSGSSDSPSSSVRESQGRRNPFSYLWPFRSSSSGDNNDEAAGSSLPTIRGNNNEREYYGWPFNDY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00904 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 231 IPR013083 -
Pte13g00904 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 86 229 - -
Pte13g00904 299 Pfam Ring finger domain 183 225 IPR001841 -
Pte13g00904 299 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Pte13g00904 299 SMART ring_2 184 224 IPR001841 -
Pte13g00904 299 MobiDBLite consensus disorder prediction 259 285 - -
Pte13g00904 299 CDD RING-H2_RNF126-like 184 225 - -
Pte13g00904 299 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Pte13g00904 299 MobiDBLite consensus disorder prediction 230 252 - -
Pte13g00904 299 MobiDBLite consensus disorder prediction 230 289 - -
Pte13g00904 299 FunFam E3 ubiquitin-protein ligase RING1-like 147 231 - -
Pte13g00904 299 SUPERFAMILY RING/U-box 164 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00904 Pte-Chr13 7896879 7899726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00904 131 232 C3H Transcription Factor Family AT5G01980 44.231 1.31e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00904 K11982 - jre:109008136 438.728