Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte13g00904 | ATGATGGCTAGTAGCAGAAACACTCATTGGTGTTATAGATGCAGGAGATCATTTCTTTTAAGAGGGACAGCTGTAGTTTGTCCTGAATGCAATGGAGGTTTTGTTCAAGAGCTTGATGACATGGTGCATGTTCGGCCACTAGATTTCTTTGGATTAGATAATGGCGAAGAACAGGATAGACAGATCAGATTTTTGTCAGAATTGATAAGGCACCGACTAGCAGATAGGGGCAGCCATCGTGATATTAGGACAAGGTCTGGTTCTATTACTGACCATAACCCGGGATTTGGTCCTTTATTGATCTTTGGTGGCCAGATTCCTTTTAGATTATCTGGAAATAGTGCCTTGGAGACTCTCCTAGATGGTGCTCCTGGAATTGGTGTAACACGGGGCAGTACAGGTGATTATTTCATAGGTCCTGGTTTGGAAGAACTATTTGAGCAGCTTTCTGTTAATGATCGACGAGGCCCTCCTCCAGCTTCCAGAACCTCAATAGATGCAATGGCTATGATTAAGATCACGCAGAGGCATCTTCGTTCAGATTCACATTGTCCAGTTTGCCAAGACAAATTTGAGCTGGGATCTGAAGCAAGGCAAATGCCTTGCAACCATATATATCACTCGGATTGTATTGTTCCATGGCTTGTGCAACATAACTCTTGTCCCGTATGCCGGCAGGAATTGCCACCTCAAAATCTGAGCAGCAGTGGCAGTTCAGATAGTCCTTCCTCCAGTGTAAGGGAGAGCCAAGGAAGGCGAAATCCATTCTCCTACCTATGGCCTTTCCGCTCATCCAGTTCTGGGGATAACAATGATGAAGCAGCTGGAAGTAGCTTACCTACCATCCGTGGCAACAACAATGAAAGAGAGTACTATGGTTGGCCTTTTAATGATTACTGA | 900 | 0.4467 | MMASSRNTHWCYRCRRSFLLRGTAVVCPECNGGFVQELDDMVHVRPLDFFGLDNGEEQDRQIRFLSELIRHRLADRGSHRDIRTRSGSITDHNPGFGPLLIFGGQIPFRLSGNSALETLLDGAPGIGVTRGSTGDYFIGPGLEELFEQLSVNDRRGPPPASRTSIDAMAMIKITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPPQNLSSSGSSDSPSSSVRESQGRRNPFSYLWPFRSSSSGDNNDEAAGSSLPTIRGNNNEREYYGWPFNDY* | 300 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte13g00904 | 299 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 231 | IPR013083 | - | |
Pte13g00904 | 299 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 86 | 229 | - | - | |
Pte13g00904 | 299 | Pfam | Ring finger domain | 183 | 225 | IPR001841 | - | |
Pte13g00904 | 299 | Pfam | zinc-ribbon | 7 | 38 | IPR039525 | GO:0061630 | |
Pte13g00904 | 299 | SMART | ring_2 | 184 | 224 | IPR001841 | - | |
Pte13g00904 | 299 | MobiDBLite | consensus disorder prediction | 259 | 285 | - | - | |
Pte13g00904 | 299 | CDD | RING-H2_RNF126-like | 184 | 225 | - | - | |
Pte13g00904 | 299 | ProSiteProfiles | Zinc finger RING-type profile. | 184 | 225 | IPR001841 | - | |
Pte13g00904 | 299 | MobiDBLite | consensus disorder prediction | 230 | 252 | - | - | |
Pte13g00904 | 299 | MobiDBLite | consensus disorder prediction | 230 | 289 | - | - | |
Pte13g00904 | 299 | FunFam | E3 ubiquitin-protein ligase RING1-like | 147 | 231 | - | - | |
Pte13g00904 | 299 | SUPERFAMILY | RING/U-box | 164 | 231 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte13g00904 | Pte-Chr13 | 7896879 | 7899726 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte13g00904 | 131 | 232 | C3H Transcription Factor Family | AT5G01980 | 44.231 | 1.31e-24 | 101 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte13g00904 | K11982 | - | jre:109008136 | 438.728 |