Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00897 ATGCAACATAGCATCTTAAGTTTGTTTCTACTTTGTCAACGACAATGTTCTGTCAACAGGCATGAGTATCCTTCATTTGGTGTTAACGAATTTATAAATAGTGCCAAAACTATCGTGAAGATGGTCTGCAAATTGATGAGCATCAAAAAGATGTCAGAGAAAACCCCCTTTGATATTGCTGGCAACAGAAGGCTCATGCGAAAGCTTGAAGGGAAATCATTTAGTATGTATCCTAATCAGACTGATCATTCACTTGGCTTGAGGCTTTCCAACCACACTAATAGTGATCCTGAAGATGGTTCTCCTCAGAAGAAGTCTGAGGAATCAGCTACAGATGACGCCAAATTTGCTTGCAACTATTGCAACAAGAAATTCTACGGCTCTCAAGCCTTAGATGGGCACCAGAGTGCTCACAAGGGAGACAAATGCAAAAGTTCAAAAAGAGCTGAAAAAGAGTCTTTATGCGAGTCTCGATATCGACTAACATCAGCGTTTTCAACCGTATGGAGGCCTTCGTTCCTTTCATAG 528 0.4091 MQHSILSLFLLCQRQCSVNRHEYPSFGVNEFINSAKTIVKMVCKLMSIKKMSEKTPFDIAGNRRLMRKLEGKSFSMYPNQTDHSLGLRLSNHTNSDPEDGSPQKKSEESATDDAKFACNYCNKKFYGSQALDGHQSAHKGDKCKSSKRAEKESLCESRYRLTSAFSTVWRPSFLS* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00897 175 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Pte13g00897 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Pte13g00897 175 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 69 142 IPR044246 GO:0009788
Pte13g00897 175 MobiDBLite consensus disorder prediction 85 110 - -
Pte13g00897 175 Gene3D Classic Zinc Finger 89 168 - -
Pte13g00897 175 SUPERFAMILY beta-beta-alpha zinc fingers 112 143 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00897 Pte-Chr13 7854317 7854844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00897 108 143 C2H2 Transcription Factor Family AT1G80730 55.556 4.77e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g00897 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00897 - - nta:107814553 62.7734