Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00888 ATGAGGGAAGAGGATTCTAATTGGTTCTCAAGATGGGAAGAACAACTCCCTTCCCCTGAGGAACTTATGCCTCTCTCTCAATCTCTCATCACTCCTGATCTTGCTTTAGCTTTTGATATCAGAAATCCAAACCTCAATCACCACCTTCAGAACAATAACAATCTTCATACTATTAACAGCAGCCACCTACTTAATAGTAACAGTACTAGCCCACAACAGCAACCGACCCCACCTCCTATTACTGCTGCTAATAGTCCTTTACCTTCGCCTGGGAATCCGAACCAGCAGCAACTCAATTCATCTGAATTTGCTGATTCCGCTGAGTTGGGTTCTGGTACTGCTGGTGATGAACCTGCTAGGACGCTTAAAAGACCGAGGCTTGTTTGGACCCCACAACTTCACAAGAGGTTTGTCGACGCCGTGGCTCACTTGGGTATTAAAAATGCTGTGCCCAAGACTATAATGCAGCTCATGAGTGTGGATGGGTTGACTCGAGAAAACGTGGCTAGTCATTTGCAAAAATATAGACTTTATCTGAAACGCATGCAGGGACTGTCGGCTGGCAGTGGAGGAGGCGCTGGCACTGGCGGTGCTGGTGGAGGAGGAGCTGCAGCCTTGGCTGCTTCGGCAGATCCTGCTACGGACCATTTGTTTGCGAGCTCGCCGGTGCCGCCTCATTTCTTGCATCCGGGTCGGTCCAATTCTGATCATTTCATGCCGTTTGTACCAGTGCCGGCTTTGCAGCATCACCATCACCAGCAGCAGATGGCTGCAGCTGCAGCTGTGACAGGGCATCCACAATTACAGCCACAGTTTCATAGGCAGATGGGGCACTTTGGGTCGCCTCCAAATGGGCATTTTGACCATCCTTTGCTAGCTAGACAAAGTCAGCCGTTTCATAGGATGGGTGCATCATTGCATAGCCAAGCACCTAATTATATAGAGGATTTGGAGTCAGCTAATGCAACCGGAGGGCGAAAGGTTCTTACTTTGTTTCCAACTGGAGATGATTAA 1014 0.4892 MREEDSNWFSRWEEQLPSPEELMPLSQSLITPDLALAFDIRNPNLNHHLQNNNNLHTINSSHLLNSNSTSPQQQPTPPPITAANSPLPSPGNPNQQQLNSSEFADSAELGSGTAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAGSGGGAGTGGAGGGGAAALAASADPATDHLFASSPVPPHFLHPGRSNSDHFMPFVPVPALQHHHHQQQMAAAAAVTGHPQLQPQFHRQMGHFGSPPNGHFDHPLLARQSQPFHRMGASLHSQAPNYIEDLESANATGGRKVLTLFPTGDD* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00888 337 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 288 IPR044841 GO:0003700|GO:0006355
Pte13g00888 337 Gene3D - 121 183 - -
Pte13g00888 337 SUPERFAMILY Homeodomain-like 121 181 IPR009057 -
Pte13g00888 337 FunFam Two-component response regulator 120 183 - -
Pte13g00888 337 Pfam Myb-like DNA-binding domain 128 176 IPR001005 -
Pte13g00888 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 125 177 IPR006447 GO:0003677
Pte13g00888 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 180 IPR017930 -
Pte13g00888 337 MobiDBLite consensus disorder prediction 72 86 - -
Pte13g00888 337 MobiDBLite consensus disorder prediction 58 99 - -
Pte13g00888 337 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00888 Pte-Chr13 7661038 7664284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00888 1 338 G2-like Transcription Factor Family AT3G10760 57.867 1.56e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte13g00888 Myb_DNA-binding 2.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00888 - - qsa:O6P43_006330 449.129