Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00887 ATGAGTTTTCTGTTTGTTTGTTGGAATCTCATAGATGCAGCAGCAGTTGGAGATGCTAAGCAAGTAAAGAAGATGGGTGGGGTTCAGCCCAGAAACCGCAGAGCGTTAGGAGATATAGGAAATTTGGTAACCGCAAAAGAAGTGGAAGTCAAGCCTAACCGACCCATCACAAGGAGTTTCCGGGCTCAACTACTTGCAAATGCACAAGCTGCAGCAGTTGCTGAAAAGAACAAGAAACTAATCTATCCTAATGTGAAAGTTACTGTTGCTGTTGACGGAGTTCCTAAAAGAGACGCGGCACCAAAGGTTGCTCAGAAGAAACCAAATGTCAAACCAAAACCCGCGGAAGTCATTGAGGTAAGTGAGGAATCAAAGCCAGAAATCAAGAAAGAGAACTCTGCCAAGAAGAAAAAGGAGAAAGACTCTCGAACTCTAACTTCAGTCCTCACTGCTAGGAGCAAGGTTGCATGTGGAGTGACCAATAAACCAAAGGAGAAGATTCTTGATATCGATGCTGCTGACGCGAGTAATGAGTTGGCTGCTGTTGAGTATGTTGAAGACCTTTACAAGTTTTACAAGTTGGCTGAGCACGAAAACCGCCCACATGATTATATGGACTCACAGCCAGAGATCAACCACAGGATGAGAGCAATTCTTGTTGATTGGCTGGTTGATGTGCACAGTAAATTTGAACTCTCACACGAGACGCTGTATCTAACAATCAACATTGTCGATAGATTCCTTGCCACTAAGACCGTGCCAAGGAAGGAGCTGCAACTGGTTGGCATAAGCGCCATGTTGGTGGCCTCTAAGTACGAAGAGATCTGGCCTCCTCAGGTGAATGATTTTGTGTTGCTTTCCGATAGAGCTTATTCTCATGAGCAAATACTGCGTATGGAAAAAGTGATACTCGGCACACTTGAATGGACTTTGACGGTGCCCACATCTTACGTTTTCCTTATTCGGTTCATTAAGGCCTCAACTCCTGATCAGAAATTGGAGCATATGGTCCATTTTCTGTCTGAGCTGGGGATCATGCAATACGTCACCATAATGTACTGCCCATCCATGGTTGCTGCTTCAGCAGTCTTTGCAGCTCGGTGCACCTTAAACATGAGCCCTGCTTGGAATGAGACTCTGAAGCTTCATACTGGCTACGCAGAGGAGCAGCTCATGGATTGTGCTAGACTGTTTGTGAGTTTCCATTCCATGGCTGCAAACGGCAAGCTCCAGGTTGTGCATAGGAAGTACTCGGACGCTCAGAGAGGAGCTGTAGCTCTGCTCGCTCCAGCCAAGAACCTCTTGGATGGCGGTCCTTCCAGTTTGATAAATGATAATTAA 1341 0.4586 MSFLFVCWNLIDAAAVGDAKQVKKMGGVQPRNRRALGDIGNLVTAKEVEVKPNRPITRSFRAQLLANAQAAAVAEKNKKLIYPNVKVTVAVDGVPKRDAAPKVAQKKPNVKPKPAEVIEVSEESKPEIKKENSAKKKKEKDSRTLTSVLTARSKVACGVTNKPKEKILDIDAADASNELAAVEYVEDLYKFYKLAEHENRPHDYMDSQPEINHRMRAILVDWLVDVHSKFELSHETLYLTINIVDRFLATKTVPRKELQLVGISAMLVASKYEEIWPPQVNDFVLLSDRAYSHEQILRMEKVILGTLEWTLTVPTSYVFLIRFIKASTPDQKLEHMVHFLSELGIMQYVTIMYCPSMVAASAVFAARCTLNMSPAWNETLKLHTGYAEEQLMDCARLFVSFHSMAANGKLQVVHRKYSDAQRGAVALLAPAKNLLDGGPSSLINDN* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00887 446 Gene3D - 187 426 - -
Pte13g00887 446 SUPERFAMILY Cyclin-like 313 432 IPR036915 -
Pte13g00887 446 MobiDBLite consensus disorder prediction 112 145 - -
Pte13g00887 446 CDD CYCLIN_AtCycB-like_rpt2 314 430 - -
Pte13g00887 446 SMART Cyclin_C_2 314 431 IPR004367 -
Pte13g00887 446 Pfam Cyclin, C-terminal domain 314 429 IPR004367 -
Pte13g00887 446 FunFam G2/mitotic-specific cyclin-1 308 426 - -
Pte13g00887 446 SMART cyclin_7 221 305 IPR013763 -
Pte13g00887 446 SMART cyclin_7 318 400 IPR013763 -
Pte13g00887 446 FunFam G2/mitotic-specific cyclin 200 307 - -
Pte13g00887 446 ProSitePatterns Cyclins signature. 216 247 IPR006671 -
Pte13g00887 446 SUPERFAMILY Cyclin-like 177 311 IPR036915 -
Pte13g00887 446 MobiDBLite consensus disorder prediction 98 145 - -
Pte13g00887 446 Pfam Cyclin, N-terminal domain 187 311 IPR006671 -
Pte13g00887 446 PANTHER CYCLINS 136 419 IPR039361 -
Pte13g00887 446 PIRSF Cyclin_A_B_D_E 9 443 IPR046965 GO:0016538|GO:0044772
Pte13g00887 446 Gene3D - 201 312 - -
Pte13g00887 446 CDD CYCLIN_AtCycB-like_rpt1 164 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00887 Pte-Chr13 7655583 7657871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00887 31 392 Core Cell Cycle Gene Families AT3G11520 57.493 1.23e-142 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00887 K21777 - qsa:O6P43_006333 568.54