Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00884 ATGGCGATGAAGTCAGGGTCACTAAATTACTGGAGAGATTACTTTAGGACTTCAAGTTATGATATATTTGATATAATTGAGCACGCGATGGTCGTAGCCGCTTCTGATTGTCCAAAGGAGTTCAGATTACGGAGGGATCGAATTGCAGAGCTGTTATTCTCGTCTACATTGACTCGCTGTTCTGGATGTGACCAAGTTCAATTGGCAGTGCCGGCTAATGATGAGGAAGATGGAGGTTGTAAGAGTGGTTTGGATAGAGATGGCGATGAACTTGAGGCTGGGGCTAGTAAAGAGAGTAAGAGCAACGGTAGCAGAGATGATCATGCAGACTACAACGATAAACAAGGTTTTAGCAATTATAGCTATGGAGAAGCAGAGGCATTGACTAATGAGATTGAAGAGGAATCTCAGATTATTGGAGAGGTTTTAAGGATCAAAGAGCTCCTCCTTAATGGTGAAGAAGAGTCCGATTCGGTATTATATGAATCACTTAGGAGGCTTCAGTTAATGGCTCTCACTGTGGATATTCTGCAGTCCACAGAGATTGGGAAGGTTGTCTCACGTCTCCGCAAGCATGGATCAAAGGAGATATGCAATCTTGCTAGGACACTCTACATTGGCTGGAAAGATTTGGCAGAGGAGTGGCTCAAAGCTACGACAGCTATCACAGCTTCGGAAGGTACTCCAGATTCTGTCAATCCATCCGTCCTGGATGAGGAAGAAGGGCTTCCATCTCCTCCCATGGATGAAGCATTTTTGGCCACCCAAACTGGTTCAATAGATTTCTCACAGGTATTTCTTGTTCTTGTTGACCCATCTGTTTGTAAGCACCAAGTGATCATAGAAAGGATGTCACAGACTGAAACTAACATTCTTGTTACTTCCTCGGACATTGTTCAACTGAACATTATGAAGATCTTTGATGGCATGGATGATGATGGAAATCCTCGAAACTGTGGGGGAATCATCAAGAGCCATAAAAATGGAAGGGAATCAACTCTTGATAATCAAAACCCTATAAAGAGGAAACACCAGCTCTCTGATTCGTTGCATGCTGTGGCTGATGACGGCAAAAGTAACCAAGTGAAGAAACAAGAGACTGTTGCCAAGCTAACCAAAGCGTCGAATCCTCCTTTGAAGCAAGAAAATTTGTCAAATGCTGATTCTGGACCGAGAACACCACCCAAATTGGTCAAGGACCAAAAGCAAAGTAGCAATTTCCAGAACCGGCAAAAAAGAGACAAGAATGAAATCCCAAAGACTCCTGAATGTGCTCCACAAAATAAGTTCAAACATTCTGACGAGGCTGTGGTGCAAATGAAACTGGAAGCCACAAAGAGAAAACTTCAAGAGCGGTACCAACAAGTCGAGAATGCTAAAAGGCAACGGACAATACAAGTGATGGAGTTGCATGATCTCCCAAAGCAGGGGATGGGACATAGGAATCCACATGTCAAACCTGGGAACCACAACCGGCAATGGTCTCAAGGAAGACATTAG 1500 0.4367 MAMKSGSLNYWRDYFRTSSYDIFDIIEHAMVVAASDCPKEFRLRRDRIAELLFSSTLTRCSGCDQVQLAVPANDEEDGGCKSGLDRDGDELEAGASKESKSNGSRDDHADYNDKQGFSNYSYGEAEALTNEIEEESQIIGEVLRIKELLLNGEEESDSVLYESLRRLQLMALTVDILQSTEIGKVVSRLRKHGSKEICNLARTLYIGWKDLAEEWLKATTAITASEGTPDSVNPSVLDEEEGLPSPPMDEAFLATQTGSIDFSQVFLVLVDPSVCKHQVIIERMSQTETNILVTSSDIVQLNIMKIFDGMDDDGNPRNCGGIIKSHKNGRESTLDNQNPIKRKHQLSDSLHAVADDGKSNQVKKQETVAKLTKASNPPLKQENLSNADSGPRTPPKLVKDQKQSSNFQNRQKRDKNEIPKTPECAPQNKFKHSDEAVVQMKLEATKRKLQERYQQVENAKRQRTIQVMELHDLPKQGMGHRNPHVKPGNHNRQWSQGRH* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00884 499 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 5 487 IPR044805 -
Pte13g00884 499 MobiDBLite consensus disorder prediction 74 113 - -
Pte13g00884 499 Pfam TFIIS helical bundle-like domain 164 210 IPR017923 -
Pte13g00884 499 CDD TFIIS_I 139 213 - -
Pte13g00884 499 SMART TFS2_5 139 214 IPR003617 GO:0005634
Pte13g00884 499 MobiDBLite consensus disorder prediction 364 390 - -
Pte13g00884 499 MobiDBLite consensus disorder prediction 314 336 - -
Pte13g00884 499 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 130 225 IPR035441 -
Pte13g00884 499 MobiDBLite consensus disorder prediction 475 499 - -
Pte13g00884 499 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 225 IPR035441 -
Pte13g00884 499 Coils Coil 439 466 - -
Pte13g00884 499 ProSiteProfiles TFIIS N-terminal domain profile. 140 215 IPR017923 -
Pte13g00884 499 MobiDBLite consensus disorder prediction 406 420 - -
Pte13g00884 499 MobiDBLite consensus disorder prediction 352 431 - -
Pte13g00884 499 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00884 Pte-Chr13 7632874 7636564 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pte13g00884 Med26 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00884 - - cave:132162524 548.895