Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00883 GAAACCTACATGGTGGGTTTTGTCATATCAAATATTGTCGGTATAGAGAACTATTCCGGAAGAATAAGTGGGCGTGAAATGTTATGTTTGGTCAGAGAACCGCTCAACCCAGACGATGAAAACGCCATCAAAGTACTCAACACGAGGAATGTTCATGTGGGGCATATCGAAAAGACCGTGGCTGTTGTTCTCTCACCCATGATAGACTCCGAGGCCATTTTTGTTGAAGGAAGTGTGCTCAATGCTTGTTCTTCGGGTGACCGCTATAAAATTCGTTGTCAAGTTTACATCTTTTCGAGGATGGAGATCCTTTCCGATGTTAAAACCTTGATTTTAGCGAGTGGGTTGCATTTGATTTCAGGTGCTGGTGTTTCTTTGGCCTTGCCTGACGCGATGGTGGTCTTACAGACTTTGAGTGACAAGTGCTCGGAAGATTTCAAGAAAGTGGACGAGATTTTCGATATGGTTGACAAGAATGTCAAGGAAAAACGTGATTTAATAGCGGTGGAGCCACCCAAAAATGCTATAAAGTCTGAACTTTTTATGCATCAGAAAGAAGCGTTGGGGTGGATGGTACACAGGGAGAATTCTGACGAGTTGCCTCCATTCTGGGAAAAGCAGGATGGGTCCTTTGTTAACGTGTTAACTAAGTATAGTACAGATAACAGACCAGAACCTTTACGTGGTGGTATTTTCGCAGATGATATGGGATTGGGCAAGACTTTAACTCTGTTGTCTTTGATTGCTTTTGATAAGTACGGTGGAATTGATAAATCTTCTACTGGTACGGAGGTTCAAACAACATTAGTTGTGTGCCCTCCTTTAGTGTTATCGACATGGGTAAAGCAACTAGAACAGCACACTGTACCTGGCACACTGAAGATGTATATGTATTATGGAGATACGAGGACTGATGATGCTGAGGAACTTAAGAAATATGACATAGTGTTGACAACATATAATATATTGGCTACTGAAAATTACCGGCTAAACTCACCAATGAAGATGCTAGAGTGTAGGAGAGTCATTTTAGATGAAGCGCATATAATTAAAAATGTCAGTGCTCATCAAAGTCAAGCTGTTCGTAAATTGAATGCTAAGAGAAGGTGGGTGGTTACTGGGACACCTATCCAAAATGGATCTTTTGATCTATTTTCTTTGATGGCATTTTTGCGCTTTGAGCCCTTTTCAGTTTGGTCCTACTGGATAGCTCTTGTGCAACGGCCCCTTGATCAGGGGATGCAGCAGGGTCTCAAGCGTCTGCAGGTTCTTATGGCAACAATATCTTTGCGTAGAACAAAAGATAAGGGACTGATAGAATTGCCATCAAAGAGAGTGGAGACTCATTTTGTTGAGCTCGCGAAGAATGAGAGAAAGCTATATGATGAGATAGAAAGACAGGGAAAAGACAAACTGCGTGGTTTTATTGAGGGCAAAGATATCTGGCGCAACTATTCAACAATTCTCAGCATCATTTTGCGACTTCGTCAAATCTGTACTGATACAGCCTTATGCGCCTCAGACCTTGGGTCACTTTTCCCTTCAATTAATATTGAAGCAGATGTCTCTAATAACCCGGAGTTGCTGAAAAAAATGGTCGAGGTCTTTCAAGATGGCGAAGATTATAACTGTCCAATTTGTATTTCTCCACCATCTGATATTGTGATCACACGTTGTGCTCACATATTTTGCCGTGCATGTATCTTAAGATCGTTGCATGACAACAGCGATTGTTGCCCCATATGTCGTCGTCCTCTTTCAGATTTTGACCTCTTTTCAGCCCCTTCTAGGTCTTCCGAGACTGATGATGATGCACCACCATCATCGTCATGTAAGGAAGGCACATCTTCAAAGGTTTCTGCTCTCTTGGGACTTCTTTTGGCTTCAAGAGATCAAAACCCAAGCAGAAAGTCAGTAGTATTTTCACAGTTTCGTAAGATGTTGGCAATACTTGAGAAGCCGCTAAAAGCAGCCAACTTTAAGGTTTTACGCATGGATGGTATGATGAATGCTAAGAAAAGGGCTCGAGTCATAGAAGAGTTTTCTGACTCGACTGTAGGCAGTACCATGGTTTTGCTAGCTAGTCTCAAGACTTCATGTCCAGGAATTAACCTTACAGCTGCCTCTAGAGTATACTTGTTCGAACCATGGTGGAACCCAGCAGTTGAGGAGCAGGCAGTGGATCGTGTCCACCGCATTGGACAGAAGGAAGATGTCAAGATTGTGAGGTTAATTGTTCGAAACAGTATAGAGGAGAGGGTACTTAAGTTGCAGGAGAAAAATAAGGAACTTGCTAGAGATGCATTTGGAAGAAGATCAGTGAAGAGTCGAAGGCAGGTGAGCGCAGATGATCTGCGTGCTCTGATGTCCCTG 2373 0.4265 ETYMVGFVISNIVGIENYSGRISGREMLCLVREPLNPDDENAIKVLNTRNVHVGHIEKTVAVVLSPMIDSEAIFVEGSVLNACSSGDRYKIRCQVYIFSRMEILSDVKTLILASGLHLISGAGVSLALPDAMVVLQTLSDKCSEDFKKVDEIFDMVDKNVKEKRDLIAVEPPKNAIKSELFMHQKEALGWMVHRENSDELPPFWEKQDGSFVNVLTKYSTDNRPEPLRGGIFADDMGLGKTLTLLSLIAFDKYGGIDKSSTGTEVQTTLVVCPPLVLSTWVKQLEQHTVPGTLKMYMYYGDTRTDDAEELKKYDIVLTTYNILATENYRLNSPMKMLECRRVILDEAHIIKNVSAHQSQAVRKLNAKRRWVVTGTPIQNGSFDLFSLMAFLRFEPFSVWSYWIALVQRPLDQGMQQGLKRLQVLMATISLRRTKDKGLIELPSKRVETHFVELAKNERKLYDEIERQGKDKLRGFIEGKDIWRNYSTILSIILRLRQICTDTALCASDLGSLFPSINIEADVSNNPELLKKMVEVFQDGEDYNCPICISPPSDIVITRCAHIFCRACILRSLHDNSDCCPICRRPLSDFDLFSAPSRSSETDDDAPPSSSCKEGTSSKVSALLGLLLASRDQNPSRKSVVFSQFRKMLAILEKPLKAANFKVLRMDGMMNAKKRARVIEEFSDSTVGSTMVLLASLKTSCPGINLTAASRVYLFEPWWNPAVEEQAVDRVHRIGQKEDVKIVRLIVRNSIEERVLKLQEKNKELARDAFGRRSVKSRRQVSADDLRALMSL 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00883 791 Gene3D - 1 118 - -
Pte13g00883 791 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 150 789 - -
Pte13g00883 791 ProSitePatterns Zinc finger RING-type signature. 559 568 IPR017907 -
Pte13g00883 791 SMART ring_2 544 582 IPR001841 -
Pte13g00883 791 SMART helicmild6 649 734 IPR001650 -
Pte13g00883 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 432 IPR027417 -
Pte13g00883 791 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 621 781 IPR001650 -
Pte13g00883 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 789 IPR027417 -
Pte13g00883 791 ProSiteProfiles Zinc finger RING-type profile. 544 583 IPR001841 -
Pte13g00883 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 522 601 IPR013083 -
Pte13g00883 791 MobiDBLite consensus disorder prediction 595 616 - -
Pte13g00883 791 SUPERFAMILY RING/U-box 531 588 - -
Pte13g00883 791 CDD SF2_C_SNF 616 745 - -
Pte13g00883 791 SMART ultradead3 176 408 IPR014001 -
Pte13g00883 791 Pfam SNF2-related domain 183 502 IPR000330 GO:0005524|GO:0140658
Pte13g00883 791 Gene3D - 442 791 IPR027417 -
Pte13g00883 791 Pfam Helicase conserved C-terminal domain 618 734 IPR001650 -
Pte13g00883 791 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 221 394 IPR014001 -
Pte13g00883 791 Coils Coil 747 767 - -
Pte13g00883 791 Gene3D - 213 433 IPR038718 -
Pte13g00883 791 Pfam HIRAN domain 6 97 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pte13g00883 791 SMART HIRAN_2 5 99 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pte13g00883 791 Pfam Zinc finger, C3HC4 type (RING finger) 541 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00883 Pte-Chr13 7627267 7631658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00883 1 791 RAD5 or RAD16-like Gene Family AT5G05130 57.688 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte13g00883 SNF2_N 1.5e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00883 K15711 - fve:101311093 976.081