Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00879 ATGCAGCAGGAGAAGTCCGACTTCTACCGATATCTCGCTGCAGGTGGACATCACAACTTGCCGGCAACGGCAGCTGCTACCACATCAACGACAAGTTCCCACACTATGCGAAGCTTTTGTAGCTCATCTTCTTATTACCCTCTGGAAATTTTTTCTGAAATCAGCGATGTCACGCCGGAGGATAGGGCCCTTTCTGCTTTGAAGAATCACAAAGAGGCTGAGAGGAGAAGAAGAGAGAGAATTAACTCCCACCTCGACAAACTTCGGACTATTCTTCCTTGTAATTCAAAGATGGACAAAGCTTCTCTTCTCGCTAAGGTTGTCGAAAGAATTAGAGAGTTGAAACAGCAAACTTCTGAAATCACTAGACTCGAAACATTCCCATCTGAGACAGATGAAATCACTGTGCTTTCAACCAACGGTGACTACGCAGATGATGGCAGGTTAATCTTCAAAGCTTCTTTGTGCTGTGAAGACCGCTCGGACCTAATACCTGACTTAATTGAAATCCTGAAATCCCTCCAGCTCAAAACCCTCAAGGTAGAAATGGCCACACTCGGAGGAAGGACGCGTAATGTTCTCCTTGTTGCTGCAGATAAACACCATAGCGTCGAATCTACTCATTTCTTGCAGAATGCATTGAAATCCTTGATAGAACGTCGTTCAAGTTCAGGTGAAAGGTCTAAGCGGAGACGCGTAGTTCTAGATTAG 711 0.4515 MQQEKSDFYRYLAAGGHHNLPATAAATTSTTSSHTMRSFCSSSSYYPLEIFSEISDVTPEDRALSALKNHKEAERRRRERINSHLDKLRTILPCNSKMDKASLLAKVVERIRELKQQTSEITRLETFPSETDEITVLSTNGDYADDGRLIFKASLCCEDRSDLIPDLIEILKSLQLKTLKVEMATLGGRTRNVLLVAADKHHSVESTHFLQNALKSLIERRSSSGERSKRRRVVLD* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00879 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Pte13g00879 236 Gene3D - 60 125 IPR036638 GO:0046983
Pte13g00879 236 FunFam transcription factor bHLH30 60 123 - -
Pte13g00879 236 SMART finulus 71 120 IPR011598 GO:0046983
Pte13g00879 236 Pfam Helix-loop-helix DNA-binding domain 69 114 IPR011598 GO:0046983
Pte13g00879 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 125 IPR036638 GO:0046983
Pte13g00879 236 PANTHER TRANSCRIPTION FACTOR BHLH30 35 233 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00879 Pte-Chr13 7571452 7573627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00879 1 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 62.661 4.13e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte13g00879 HLH 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00879 - - qsu:111998080 313.923