Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00878 ATGGGACTCTGTCATGGAAAACCATCTGAAAACAAAAAACCTGAATTTGGAGGTAGAACAACATGTGGTGAAAATGAACAACTGCCACCCAATTCTCAGGGTGGTAAAATCTCAACTACTTTTCCATTCTATAGTCCAAGCCCTTCGCCTAGTCTATTCAAGACGTCACCTACAAATTCAAGTGTGAGCTCAACTCCTCTGCGAATTTTCAAGCGCCCGTTTCCACCTCCTTCACCAGCAAAGCACATTCGGGCATTGCTTGCTCGAAGGCATGGTTCTGTTAAGCCAAATGAGGCCACTATTCCCGAAGGAAGTGAGTGCGAAATTGGGTTGGACAAGAATTTTGGGTTTTCTAAGCACTTTGTAGCTCACTATGAGCTTGGAGAAGAAGTGGGTCGTGGGCACTTTGGGTATACGTGTTCAGCAAAAGGTAAGAAGGGAAGTATGAAAGGGCTGGATGTGGCTGTCAAGGTTGTCCCAAAATCAAAGATGACGACGGCGATTGCTATGGAAGATGTAAGAAGAGAAGTGAAGATACTGAGAGCTCTAAGTGGACATAAGAACCTAGTGCAGTTCTATGAAGCCTACGAAGATGACGACAATGTATACATAGTGATGGAGTTATGCAAGGGGGGTGAACTGTTAGATAGAATACTCTCCAGGGGTGGAAAATACACAGAAGAAGATGCTAAGGTTGTCATGAATCAGATTTTGAGTGTGGTAGCATACTTTCATCTTCAAGGTGTGGTTCACCGTGATCTCAAGCCAGAGAATTTTCTTTTTACTTCGAAAGATGAAAATTCAGAGCTCAAGGTCATAGATTTTGGTCTCTCTGATTATGTGAAGCCAGATGAGAGGTTGAATGATATTGTAGGAAGTGCTTATTATGTAGCTCCTGAAGTTTTACATAGATCTTATGGGACGGAAGCAGACATGTGGAGTATTGGTGTGATTGCTTATATTCTTTTATGTGGAAGCCGGCCCTTTTGGGCTCGGACAGAATCTGGCATTTTTCGAGCTGTCCTAAAAGCAGGTCCTAGTTTTGATGAAGCTCCCTGGCCTTCATTATCACCAGATGCAATCGATTTTGTGAAGCTATTATTGAACAAGGACTTCCGTAAAAGAATAACAGCAGCTCAGGCTCTTAGTCATCCCTGGCTGGCCAATAATGAAGAAACCAGAATACCTTTGGATATGATAATCTATAAGCAAGTTAAAGTGTACATATGCTCCACTTCTTTGCGCAAAGCAGCATTAGGGGCTCTGGCAAAGACATTAACTGTATGCCAGCTTGCTTATCTCCGGGAACAATTTCAAATCTTAGGGCCAAATAGAAGTGGATTCATCTCAATGCAGAACTTTAAGACAGCCGTTTTGAGGAGCGCTACTGATGCATCTAAGGATTCGCGGGTTCTGGATTTTGCAAGCATGGTCAGCTCTATCCAATACAGGAAATTGGACTTCGAGGAATTTTGTGTAGCTGCTATAAGTGTACACCAGCTAGAGGGAATGCAGACTTGGGAGCAACATGCGAGACGTGCATATGAGCTGTTTGAAAAGGATGGAAACAGAGCTATCATGATTGAGGAGCTTGCATCGGAACTTGGACTTGGCCCATCTGTACCTGTTCATGTGGTTCTTCAAGACTGGATAAGGCATGCAGACGGGAAACTAAGTTTCCTTGGATTTATTAGACTTCTGCATGGGATATCTTCTCGCACATTGCATAAGGCTTGA 1737 0.4329 MGLCHGKPSENKKPEFGGRTTCGENEQLPPNSQGGKISTTFPFYSPSPSPSLFKTSPTNSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEATIPEGSECEIGLDKNFGFSKHFVAHYELGEEVGRGHFGYTCSAKGKKGSMKGLDVAVKVVPKSKMTTAIAMEDVRREVKILRALSGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDRILSRGGKYTEEDAKVVMNQILSVVAYFHLQGVVHRDLKPENFLFTSKDENSELKVIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKAGPSFDEAPWPSLSPDAIDFVKLLLNKDFRKRITAAQALSHPWLANNEETRIPLDMIIYKQVKVYICSTSLRKAALGALAKTLTVCQLAYLREQFQILGPNRSGFISMQNFKTAVLRSATDASKDSRVLDFASMVSSIQYRKLDFEEFCVAAISVHQLEGMQTWEQHARRAYELFEKDGNRAIMIEELASELGLGPSVPVHVVLQDWIRHADGKLSFLGFIRLLHGISSRTLHKA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00878 578 ProSiteProfiles Protein kinase domain profile. 125 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00878 578 FunFam Calcium-dependent protein kinase SK5 297 392 - -
Pte13g00878 578 Pfam Protein kinase domain 125 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00878 578 PANTHER SERINE/THREONINE-PROTEIN KINASE 112 554 - -
Pte13g00878 578 SUPERFAMILY EF-hand 416 569 IPR011992 -
Pte13g00878 578 Gene3D - 408 569 - -
Pte13g00878 578 FunFam CDPK-related kinase 1 118 213 - -
Pte13g00878 578 SMART serkin_6 125 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00878 578 CDD STKc_CAMK 124 386 - -
Pte13g00878 578 ProSiteProfiles EF-hand calcium-binding domain profile. 429 464 IPR002048 GO:0005509
Pte13g00878 578 Gene3D Phosphorylase Kinase; domain 1 118 214 - -
Pte13g00878 578 FunFam CDPK-related kinase 1 424 496 - -
Pte13g00878 578 SUPERFAMILY Protein kinase-like (PK-like) 123 446 IPR011009 -
Pte13g00878 578 Gene3D Transferase(Phosphotransferase) domain 1 215 407 - -
Pte13g00878 578 ProSitePatterns Protein kinases ATP-binding region signature. 131 157 IPR017441 GO:0005524
Pte13g00878 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Pte13g00878 578 FunFam CDPK-related kinase 3 117 289 - -
Pte13g00878 578 MobiDBLite consensus disorder prediction 1 65 - -
Pte13g00878 578 MobiDBLite consensus disorder prediction 24 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00878 Pte-Chr13 7549028 7554686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00878 1 575 EF-hand Containing Proteins AT3G50530 65.342 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pte13g00878 Pkinase 4.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00878 K13412 - cave:132162604 964.911