LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte13g00876	ATGCCATACCTTGTTCGTGAGAATCTATTTATCGGTAATATCGGTGACGCCGCGGCGGTACTTGAAAATGGGAGTGCTGAGATCACACATTTGCTGTCGGTTCTGAGCACAGCTTCCATTTCATTCTTCTCACAATGGCGTGAAGGATTAACCATTCCCACGAAGGAAATCAGCAAGGTCTATGCTGGTGGATCTGATGCTGCCAGTGACAATTTGGTTGATTCGTCCAGGACTTCATTGTCGCCGGACAAGCTTCTCTACTCCTTGGAGTATGCCGGGAAGGATCTCAAATTGGTCAGGATGGCAGTTGCCATTAGGGATATGGAGACTGAAAATTTGTTGGATTTTTTGGAGGTCTGCTTGGATTTTATTGACACCAGTAGGAAACAAGGCTCCGTTCTCGTCCACTGCTTCGCTGGAGTATCAAGGAGCGCGGCAATCATTACAGCTTATTTGATGAGAACCGAACGTCTATCTCAAGAAGATGCTCTCGAGTCTTTGAAGCAAAGCTGTGAATTTGTTTGCCCCAATGATGGTTTTCTTGAGCAGCTGAAAATGTTTGAAGAGATGGGGTTCAAGGTAGATCATTCCAGCTCAATATACAGGCGGTTTCGCTTGAAAAATCTGGGTGAAACATATAATAGGGGCGAGAAAATTGATAGTTCCAAATTTGGGGCAGATCCTGGCAAGCCGAAAGAAGCTTCCACTGAGGTAGCAGTGACTCTTGGCACAGGAAATAGATGCACAGCTGCATACCGTTGTAAGAAGTGTCGACGAGTTGTCGCACTGCAAGATCATGTGGTGGATCACTCGCCTGGTGAGGGCGAGAGTGCTTTTGATTCGCACAAGTGGAGAAGTGGCTACCCTTTTAATAAGTCCGATGAATCTCCGTGTTCATCTATATTCATTGAACCTCTGAAGTGGATGACAGCAGTTGAGGAAGGCGCATTGGAGGGTAGGCTGTCCTGTGCCCACTGTGATTCCCGCTTGGGATACTTCAACTGGTCAGGTATCCAATGCAGCTGCGGAAGCTGGATTACTCCAGCATTTCAGCTCCATAAAAGCCGAGTGGACAGGAGCAGTATCTGA	1089	0.4711	MPYLVRENLFIGNIGDAAAVLENGSAEITHLLSVLSTASISFFSQWREGLTIPTKEISKVYAGGSDAASDNLVDSSRTSLSPDKLLYSLEYAGKDLKLVRMAVAIRDMETENLLDFLEVCLDFIDTSRKQGSVLVHCFAGVSRSAAIITAYLMRTERLSQEDALESLKQSCEFVCPNDGFLEQLKMFEEMGFKVDHSSSIYRRFRLKNLGETYNRGEKIDSSKFGADPGKPKEASTEVAVTLGTGNRCTAAYRCKKCRRVVALQDHVVDHSPGEGESAFDSHKWRSGYPFNKSDESPCSSIFIEPLKWMTAVEEGALEGRLSCAHCDSRLGYFNWSGIQCSCGSWITPAFQLHKSRVDRSSI*	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte13g00876	362	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	1	193	IPR020422	GO:0006470\|GO:0008138
	Pte13g00876	362	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	114	169	IPR000387	GO:0016311\|GO:0016791
	Pte13g00876	362	SMART	dsp_5	1	190	IPR020422	GO:0006470\|GO:0008138
	Pte13g00876	362	PIRSF	DUSP12	86	362	IPR016278	GO:0006470\|GO:0008138
	Pte13g00876	362	PIRSF	DUSP12	3	58	IPR016278	GO:0006470\|GO:0008138
	Pte13g00876	362	Gene3D	Protein tyrosine phosphatase superfamily	4	211	IPR029021	-
	Pte13g00876	362	ProSitePatterns	Tyrosine specific protein phosphatases active site.	135	145	IPR016130	GO:0016311\|GO:0016791
	Pte13g00876	362	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	1	359	-	-
	Pte13g00876	362	CDD	DSP_DUSP12	4	195	-	-
	Pte13g00876	362	FunFam	Dual specificity protein phosphatase 12-like	4	210	-	-
	Pte13g00876	362	Pfam	Dual specificity phosphatase, catalytic domain	98	189	IPR000340	GO:0008138\|GO:0016311
	Pte13g00876	362	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	4	193	IPR029021	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte13g00876	Pte-Chr13	7501939	7505227	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte13g00876	98	189	Protein tyrosine phosphatase (PTP) family	AT3G06110	35.484	1.81e-13	66.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte13g00876	K14819		-	qsa:O6P43_010054	590.497