Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00850 ATGTCCATTGAAGACACTCTAAGATCTCTATCACTGGATTATCTGAACCTGCTCATAAATGGACAAGCCTTCAGTGACGTGACCTTCAGTGTAGAAGGTCGTTTAGTTCACGCTCACCGCTGCATCCTTGCTGCCAGAAGCCTCTTCTTCAGGAAATTCTTTTGTGGTTCAGACTCTCCTTCAGGGATCGATCCATCAGGGATTCGGGTCAGTTCGTCCATCTCCATGAACAGACCACAAGCAGCTGGGATCATACCGGTCAACTCAGTGGGCTACGAGGTGTTCCTGTTGCTGCTGCAGTTCCTCTACAGTGGACAAGTCTCTGTTGTGCCTCAGAAGCATGAGCCACGGCCTAATTGTGGTGAGAGGGGTTGTTGGCACACGCATTGCACCTCAGCCGTCGATCTTGCCCTTGACACTCTTGCAGCTGCTAGATCCTTTGGTGTCGAGCAGCTTGCATTGCTTACTCAGAAACAATTGGCCAACATGGTGGAGAAGGCCTCGATCGAAGATGTAATGAAAGTGCTACTAGCATCAAGGAAGCAAGACATGCACCAGCTCTGGACCACTTGCTCCCACCTTATTGCCAAGTCAGGTCTCCCTCCCGAAGTTCTTGCCAAACACCTCCCCATTGATATTGTTGCCAAAATCGAAGAGCTTCGTCTCAAAACCTCCCTAGCTCGTCGCTCAAGCTTAATGACTCACCACCCCCATCATCACCATGATCTTGGTGTTGCAGCAGATCTTGAGGACCAAAAGATTCGAAGAATGAGAAGGGCACTTGATTCATCTGATGTAGAACTAGTTAAGCTCATGGTCATGGGGGAAGGCCTAAACTTGGATGAAGCATTGGCATTGCACTATGCAGTAGAGAACTGCAGTCGAGAGGTGGTGAAGGCGTTGCTTGAGCTTGGTGCTGCAGATGTTAACTATCCTGCAGGACCTGCTGGCAAAACCCCACTTCACATTGCTGCAGAGATGATCTCTCCTGACATGGTGGCTGTACTTTTGGATCATCATGCTGATCCAAATGTTCGTACGGTTGATGGAGTCACTCCTCTTGATGTACTCCGAACCCTAACGTCTGATTTTCTCTTCAAAGGAGCAATACCTGGATTCACACATATAGAACCCAACAAGCTAAGGCTGTGCTTAGAGCTTGTTCAGTCGGCCGCTCTTGTAATTTCGCGAGAAGGTAAAGTAAACCTTTCTACATCATCAATTATTTACCCGCCAACGAGTGAAGATAATCTTAGTTGCAGTAGCGGCGGTAATATTGCTAAACGTAACCTGGATTCAAGGTTGGTTTATCTCAATTTAGGAGCAACTGGATCAGCCCCAATGATTACAAGACTGGATGGAGATGATGATAATAGTCACAACAGTCAGAGGGAACAAGTTTTACACCGTCATGGAGCACAAGGTGGTTGTGACCCGACAATGTACCATCATTCTCTCTGA 1461 0.4764 MSIEDTLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGSDSPSGIDPSGIRVSSSISMNRPQAAGIIPVNSVGYEVFLLLLQFLYSGQVSVVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLANMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLIAKSGLPPEVLAKHLPIDIVAKIEELRLKTSLARRSSLMTHHPHHHHDLGVAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMISPDMVAVLLDHHADPNVRTVDGVTPLDVLRTLTSDFLFKGAIPGFTHIEPNKLRLCLELVQSAALVISREGKVNLSTSSIIYPPTSEDNLSCSSGGNIAKRNLDSRLVYLNLGATGSAPMITRLDGDDDNSHNSQREQVLHRHGAQGGCDPTMYHHSL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00850 486 SUPERFAMILY POZ domain 9 162 IPR011333 -
Pte13g00850 486 FunFam regulatory protein NPR5 isoform X2 247 364 - -
Pte13g00850 486 Pfam Ankyrin repeats (3 copies) 264 346 IPR002110 GO:0005515
Pte13g00850 486 SMART BTB_4 25 164 IPR000210 GO:0005515
Pte13g00850 486 Coils Coil 486 486 - -
Pte13g00850 486 Gene3D Potassium Channel Kv1.1; Chain A 2 197 IPR011333 -
Pte13g00850 486 FunFam regulatory protein NPR5 isoform X1 4 197 - -
Pte13g00850 486 ProSiteProfiles BTB domain profile. 25 111 IPR000210 GO:0005515
Pte13g00850 486 SMART ANK_2a 316 345 IPR002110 GO:0005515
Pte13g00850 486 SMART ANK_2a 281 311 IPR002110 GO:0005515
Pte13g00850 486 Pfam Domain of unknown function (DUF3420) 199 258 IPR024228 -
Pte13g00850 486 CDD BTB_POZ_NPR_plant 8 164 - -
Pte13g00850 486 ProSiteProfiles Ankyrin repeat region circular profile. 316 346 - -
Pte13g00850 486 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 482 IPR044284 GO:0099402
Pte13g00850 486 Gene3D - 247 364 IPR036770 -
Pte13g00850 486 ProSiteProfiles Ankyrin repeat profile. 316 348 IPR002110 GO:0005515
Pte13g00850 486 Pfam BTB/POZ domain 16 112 IPR000210 GO:0005515
Pte13g00850 486 SUPERFAMILY Ankyrin repeat 275 359 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00850 Pte-Chr13 7246777 7250059 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pte13g00850 BTB 7.2e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00850 K14508 - qsu:112012060 783.097