Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00824 ATGTCCATAAGTAGCAATGACCTACTCTGCAATGTTTGGCTTCAAGGGATAAGGGAGCAGGAGCAGATATCTTTGCGAGTACAGAAGCAAGAAAAGATGGGTAGAGGGAAGATTAAGATAAAGAAGATAGAGAACTTGAATAGCAGGCAGGTCACATTCTCCAAACGCCGAAATGGTTTGGTCAAGAAGGCGAAGGAGTTGTCAGTTTTATGTGATGCAGAGGTAGCTGTCATAATTTTCTCTAGTACAGGAAAGCTGTACGAGTTCTCAAGCACAAGCATGAACCATACAATCTCGAGGTACCGAAGATGGGAGCAGGACCATACTGTTGAGCAACCGGTTCAGAATATGGAGCCTCAGTTAGAAATGCTAAAGAATGAAATTGCACGACTTCGTTTCGCATACCAGCGGATAATGGGGAAGCAACTCACAGGGTTGAGCTTCAATGAATTGCAGAAACTAGAAGAGCAATTGAGCGAAGGAGTACATGCTGTAAAAGGGAAGAAGGAGGATATGCTTCTAAAGCAGCTTAGGAGGTCAAGACATCAGGAGCAGATGGCCATCCTGGAGAATGAAGCTTTGCGTAAAAAACTGGAGAAGTTACAACATAAGACAAACTCACCCTTCGAAGAATTCAATCTGGAAGATGGGAGATTTTCGTTTGAAGGATCAAATGACACTTCTAATTGTGCTTCAGATGATAATGACCTTTCAGGCACTTCCTTGCAGTTAGGGTTGTCATTGCCGACAGAATATGCTAGCAAGTAG 768 0.4323 MSISSNDLLCNVWLQGIREQEQISLRVQKQEKMGRGKIKIKKIENLNSRQVTFSKRRNGLVKKAKELSVLCDAEVAVIIFSSTGKLYEFSSTSMNHTISRYRRWEQDHTVEQPVQNMEPQLEMLKNEIARLRFAYQRIMGKQLTGLSFNELQKLEEQLSEGVHAVKGKKEDMLLKQLRRSRHQEQMAILENEALRKKLEKLQHKTNSPFEEFNLEDGRFSFEGSNDTSNCASDDNDLSGTSLQLGLSLPTEYASK* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00824 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 192 - -
Pte13g00824 255 Pfam K-box region 114 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte13g00824 255 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Pte13g00824 255 FunFam MADS-box transcription factor MADS-MC 45 117 - -
Pte13g00824 255 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Pte13g00824 255 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Pte13g00824 255 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Pte13g00824 255 Coils Coil 179 204 - -
Pte13g00824 255 MobiDBLite consensus disorder prediction 218 242 - -
Pte13g00824 255 ProSitePatterns MADS-box domain signature. 35 89 IPR002100 GO:0003677|GO:0046983
Pte13g00824 255 CDD MADS_MEF2_like 34 108 IPR033896 GO:0000977|GO:0045944
Pte13g00824 255 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Pte13g00824 255 ProSiteProfiles K-box domain profile. 114 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte13g00824 255 SUPERFAMILY SRF-like 34 123 IPR036879 GO:0003677|GO:0046983
Pte13g00824 255 Gene3D - 46 125 IPR036879 GO:0003677|GO:0046983
Pte13g00824 255 MobiDBLite consensus disorder prediction 220 242 - -
Pte13g00824 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00824 Pte-Chr13 6991859 6994938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00824 33 201 MADS-box Gene Family AT3G57390 52.973 1.18e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte13g00824 K-box 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00824 - - gmx:100792278 265.774