Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00807 ATGGGTACTCCGGCGTTCCCCAATCTTGGCAAGCATTGTTCTGTTGAAGATTGCAGGCAGATTGACTTCTTACCCTTCACATGCGATCGCTGCGACCAGGTCTTCTGTTTAGAGCATCGTAGCTACATAAAGCACCACTGTCCAAGGGCTGATAAGCAGGATGTCACTGTTGTCATCTGTCCTCTTTGCGCCAAAGGAGTTCGCCTGATTCCTGATGAAGATCCAAATATATCTTGGGAGAATCATGTGAACACTGACTGTGACCCGTCAAATTACGAGAGAGTTGTAAAGAAGAAAAAGTGCCCTGTCCCTGGGTGCAGAGAGCTTTTAACATTCTCAAACACAATCAAGTGCAAGGACTGCATGATAGATCATTGTTTGAAGCACCGGTTTGGTCCAGATCACAAACGTCCTGGACCAAGAAAACCTGAAGTTGGCTTTCCATTTATGGGTCTCTTGAGCAAGAGTAGGACAGATCCTCCGAGACCCAACCATGTTGCAACCTCATCTTCATCTAAATGGGCCTCAAGTTTCCTTACTATGGCTTCAAATGTTAAAGCATCTGCTGAAGCTGGCATAACAAAATTGAGTGGTGAATTCAGTCAAGCATGGGGTGGTGCTAGGGATGGAGTGCGACAGAGCAGCATTAGCAGTGGAAATAGTCAGGTGGAGGTGTGCCCTCAGTGTGGTGCTAAGTTTTCCTCCATTACTACTCTGGTGGATCATGTACAGAAAGTGCATGAGAAGAGTAGCAGCCGTTCAGGGGTGAGAAAAGTCACTATTGATGTTTGTCCCAAATGTAACAGAGGCTTCCGAGATCCAGTGTCTCTTGTGGAGCATGTTGAGAGGGATCATGGGGGAACTTCGAGAGCATAG 876 0.468 MGTPAFPNLGKHCSVEDCRQIDFLPFTCDRCDQVFCLEHRSYIKHHCPRADKQDVTVVICPLCAKGVRLIPDEDPNISWENHVNTDCDPSNYERVVKKKKCPVPGCRELLTFSNTIKCKDCMIDHCLKHRFGPDHKRPGPRKPEVGFPFMGLLSKSRTDPPRPNHVATSSSSKWASSFLTMASNVKASAEAGITKLSGEFSQAWGGARDGVRQSSISSGNSQVEVCPQCGAKFSSITTLVDHVQKVHEKSSSRSGVRKVTIDVCPKCNRGFRDPVSLVEHVERDHGGTSRA* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00807 291 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Pte13g00807 291 Gene3D - 80 146 IPR035896 -
Pte13g00807 291 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Pte13g00807 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Pte13g00807 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Pte13g00807 291 Pfam Zinc finger, C2H2 type 263 285 IPR013087 -
Pte13g00807 291 Gene3D Classic Zinc Finger 207 290 - -
Pte13g00807 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Pte13g00807 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Pte13g00807 291 SMART c2h2final6 224 247 IPR013087 -
Pte13g00807 291 SMART c2h2final6 262 285 IPR013087 -
Pte13g00807 291 Gene3D - 3 59 IPR035896 -
Pte13g00807 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Pte13g00807 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Pte13g00807 291 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Pte13g00807 291 SUPERFAMILY AN1-like Zinc finger 93 136 IPR035896 -
Pte13g00807 291 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Pte13g00807 291 SUPERFAMILY AN1-like Zinc finger 7 50 IPR035896 -
Pte13g00807 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 250 - -
Pte13g00807 291 Pfam C2H2-type zinc finger 226 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00807 Pte-Chr13 6704493 6706199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00807 1 292 C2H2 Transcription Factor Family AT2G41835 64.189 5.21e-128 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g00807 zf-AN1 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00807 - - vvi:100255506 492.271