Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00798 ATGAATAACTTAACAATTGAGACTGAAGATTCTTTTGCAAGCTTGCTTGAGCTTGCTGCCAATAACGATATTGAGGGTTTCAAAAGATTGATTGAACGTGACCCTTCCTCTGTTGATGAGATTGGACAGTGGTATGGTCGAAGGAAAGGCTCAAAGCAGATGGTTAATGAACATCGAACGCCTTTGATGGTATCTGCCACTTATGGTAGCATTGATGTCATGAAATTGATTCTTTCATTGTCGGATGCTGATGTTAATCGAACCTGTGGCCTTGACAAGACCACTGCCCTTCACTGTGCTGCCTCAGGGGGAGCTACAAATGCAATTGATGCAGTAAAACTGCTTTTAGCTTCTGGCGCTGATCCAAATATTAGGGATGCTAATGGGGACCGTCCCGTTGATGTTATTGTTGTTCCTCCAAAGCTCCAAGATGTCGAAGGTGGCCTTCAAGAACTTCTCAGTACTGATAGTTCTCCAATTGAGCGCAATCTGAGAGTTTCAACAGTTATGTCAACTTCAAACTTGTCACTGCTATCAACTTTCCCAGAAAATGGGTCCCCATCTTATGCTGCAGACATCCAATTGAAGTTGAAGGCAAATGAGGTCCCTGCATCATCTGCTTCAGAGAAGAAGGAATATCCTGTTGACCCTTCTTTGCCAGACATCAAGAATAGTATGTATGCAACTGATGAATTCCGGATGTATTCCTTCAAGATCAGACCTTGTTCTCGTGCTTATTCCCATGACTGGACTGAATGCCCTTTTGTTCATCCGGGGGAGAATGCCCGCAGAAGAGATCCTAGGAAGTTTCATTATAGTTGCGTCCCTTGTCCAGATTTCCGAAAGGGGGCTTGTAGACGTGGGGATATGTGTGAGTACGCACACGGTGTTTTTGAGTGTTGGCTGCACCCAGCACAATACCGTACTCGTCTTTGCAAGGATGGCACATGTTGCTCGAGAAGGGTTTGTTTCTTTGCCCACACAAACGAAGAACTTCGACCGTTGTATGTTTCAACTGGTTCAGCTGTTCCTTCTCCTCGTTCATGTAGTTCTTCTGCCATGGAATTTTGTCAACCCATGAATATGTTACCTGGCTCTCCATCCTCTGTGTCTGTAATGTCCCCTTCACCATTTACTCCACCCATGTCTCCATCTGGCAATGGCATTGCACATTCTTCTGTTGCATGGCCTCAACAAAATGTCCCGTCATTGCATTTGCCAGGAAGCAATCTTCAGTGTAGTAGATTGAGATCATCTCTTAATGCTAGAGATATTCCTGCAGATGAATTCAAATTGTTGTCAGAGTATGATGCTCAGCAACAGCAACTCCTAAATGAGTTATCGTGTCTCAATCAACAATCTCTAAATCCTAATTCTTTGAACCGCCTGGGACGGCTGAAGATAATGGCACCTTCAAATCTTGATGATTTGTTTTCGGCAGAGAGTTCATCTCCCAGGTTTGCTGATCATGCAATGGGGACGACTGTTTTCTCACCGACGCATAAATCAGCTCTTCTCAATCAGTTTCAGCAACAGCAGAGTATGCTATCACCCGTGAATACAAACTTTGCAAGTAAAAACCCTGAGCATCCTCTATTCCAGACCTCCTTTGGGGTGCAAGCATCAGGTATGATGTCCCCACGCAACGCAGAACCTATTTCACCAATGAGCGCTCGCATTTCTATGCTTGCTCAACGTGAAAAGCAACTCCAATTTAGGAGCCTGAGCTTTCGAGAAGTTGGTTCCAATTCTGCATCTACTGTTGGATCCTCGATTGATCCTTGGACGAAATGGGGATCTTCTAATTGTAAGGTAGATTGGACTGCTAGTTCGGATGAATTGGGTAAGCTTCGGAGGTCGTCGTCTTTTGAGCTTGGTAATAATGGTGAGGAGCCTGATTTGTCGTGGGTTCAATCACTTGTTAAAGAATCTCCAACTGAAGTGAAGGAGAAGTTAGCATCCATTGTTCCAGGTCTTGCAGCAGCTCATTCCTTGGCTGACAGTTGA 2007 0.4459 MNNLTIETEDSFASLLELAANNDIEGFKRLIERDPSSVDEIGQWYGRRKGSKQMVNEHRTPLMVSATYGSIDVMKLILSLSDADVNRTCGLDKTTALHCAASGGATNAIDAVKLLLASGADPNIRDANGDRPVDVIVVPPKLQDVEGGLQELLSTDSSPIERNLRVSTVMSTSNLSLLSTFPENGSPSYAADIQLKLKANEVPASSASEKKEYPVDPSLPDIKNSMYATDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTCCSRRVCFFAHTNEELRPLYVSTGSAVPSPRSCSSSAMEFCQPMNMLPGSPSSVSVMSPSPFTPPMSPSGNGIAHSSVAWPQQNVPSLHLPGSNLQCSRLRSSLNARDIPADEFKLLSEYDAQQQQLLNELSCLNQQSLNPNSLNRLGRLKIMAPSNLDDLFSAESSSPRFADHAMGTTVFSPTHKSALLNQFQQQQSMLSPVNTNFASKNPEHPLFQTSFGVQASGMMSPRNAEPISPMSARISMLAQREKQLQFRSLSFREVGSNSASTVGSSIDPWTKWGSSNCKVDWTASSDELGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEVKEKLASIVPGLAAAHSLADS* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00798 668 Gene3D - 272 334 - -
Pte13g00798 668 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Pte13g00798 668 Pfam Ankyrin repeats (3 copies) 18 126 IPR002110 GO:0005515
Pte13g00798 668 PANTHER UNKEMPT FAMILY MEMBER 17 644 IPR045234 -
Pte13g00798 668 Coils Coil 433 453 - -
Pte13g00798 668 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Pte13g00798 668 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Pte13g00798 668 Gene3D - 8 142 IPR036770 -
Pte13g00798 668 SMART ANK_2a 57 87 IPR002110 GO:0005515
Pte13g00798 668 SMART ANK_2a 10 40 IPR002110 GO:0005515
Pte13g00798 668 SMART ANK_2a 92 124 IPR002110 GO:0005515
Pte13g00798 668 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Pte13g00798 668 SUPERFAMILY Ankyrin repeat 4 137 IPR036770 -
Pte13g00798 668 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Pte13g00798 668 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00798 Pte-Chr13 6614324 6619056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00798 3 644 C2H2 Transcription Factor Family AT5G12850 55.927 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte13g00798 Ank_2 6.7e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00798 - - qsa:O6P43_006533 1021.15