Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00793 ATGGCTGACCCTTGCTCAAATTTCTTCACAAGCCTTTTTAAGTTCAACTCTCTTCACTATTACCCTCCTTCAAATCCTGCTGATCCCAGCCTTTTTCCTTACCATAATCAGTACACCTTCATCAACCAGCACAGCAACTATAGTACCTTTTTCCAACCTCAACAAGGTGGCATCTGCTCACCCCCATCTCCTCCACTGAGAGAAGCACTCCCCCTTTTGCAGCTGACCCCGACAAAGGCAGAAGAGCATCAGTATCAAGAACCAGAGGAGCTTTCTTCCAGTACTAACATGGACATGATGGATCGGAGCTTAAGTAGCAAGGCCAAAGAAGATGAGGAGGAGGACGCCACTGTGACTGTTGCACTTCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCCTCTGCTCTATCTTCTTCGTCTGGGATCACCGATAAAGACCATGGCGATGTTGATGATTCTGGATTCGCCGGTAGTACACTCAACAAGGGCCAGTATTGGATCCCGACCCCTTCTCAGATTCTCATCGGTCCTACACAGTTCTCCTGCCCTGTTTGCTGTAAAGCCTTTAACAGATACAACAACATGCAGATGCATATGTGGGGGCACGGGTCACAGTACAGGAAAGGGCCAGAATCTCTGAGAGGCACACAACCGACAGGAATGCTTAGGCTTCCATGCTATTGCTGTTCGCCAGGTTGCAAGAACAACATTGATCACCCGAGGGCAAAGCCACTCAAAGACTTCAGAACTCTTCAAACACATTATAAAAGGAAACATGGAATCAAACCTTTCATTTGCAGAAAATGTGGCAAGGCTTTTGCAGTGAGAGGAGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTATTGCACATGTGGATCTGATTTCAAGCACAAAAGGTCACTTAAGGATCATATAAAAGCTTTTGGGAATGGCCATGCAGCACACGGTATGGATGGCTTAGAAGAAGAGGAACCTGCATCTGAGGTAGAGGAAAACAATGAGTCTACGCAGTGA 1029 0.4704 MADPCSNFFTSLFKFNSLHYYPPSNPADPSLFPYHNQYTFINQHSNYSTFFQPQQGGICSPPSPPLREALPLLQLTPTKAEEHQYQEPEELSSSTNMDMMDRSLSSKAKEDEEEDATVTVALHIGLPSPSAAEMASALSSSSGITDKDHGDVDDSGFAGSTLNKGQYWIPTPSQILIGPTQFSCPVCCKAFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFICRKCGKAFAVRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIKAFGNGHAAHGMDGLEEEEPASEVEENNESTQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00793 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Pte13g00793 342 PANTHER ZINC FINGER PROTEIN WIP2 41 338 IPR043584 GO:0003700|GO:0010468
Pte13g00793 342 SMART c2h2final6 266 286 IPR013087 -
Pte13g00793 342 SMART c2h2final6 182 204 IPR013087 -
Pte13g00793 342 SUPERFAMILY beta-beta-alpha zinc fingers 178 204 IPR036236 -
Pte13g00793 342 MobiDBLite consensus disorder prediction 80 112 - -
Pte13g00793 342 SUPERFAMILY beta-beta-alpha zinc fingers 248 286 IPR036236 -
Pte13g00793 342 Gene3D Classic Zinc Finger 235 320 - -
Pte13g00793 342 Coils Coil 336 342 - -
Pte13g00793 342 Gene3D Classic Zinc Finger 181 204 - -
Pte13g00793 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 286 IPR013087 -
Pte13g00793 342 MobiDBLite consensus disorder prediction 318 342 - -
Pte13g00793 342 FunFam Zinc finger protein WIP2 235 317 - -
Pte13g00793 342 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00793 Pte-Chr13 6549502 6551891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00793 1 342 C2H2 Transcription Factor Family AT3G57670 61.282 9.27e-143 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g00793 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00793 - - jre:108984376 508.834