Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00780 ATGGATTCCAGAACCAATCAGAGCAATCTGCACCAGCATCATCAGAATCACCAACCCAGTTCAGGGTTATTGCGGTTTCGCTCAGCTCCAAGCTCACTTCTTGTTAATTTCACTGGTCCTGCAAGTGGGGACTTTAGCCTCAATGAGGGCAATCCATGTGAGGTGTCTGAATCGCAGAACTTGATGTCCAGATTCGCAACCTGTTCTGAACACACTGATTCGGATTCGCCACATTTCCAGGAGTTTGAGGAGAAATCGTCCCCTGCAACATCAATCGAAGTTCCTCTGAAACTTGTGAATTCTCAGCAAGTATTTTGTCCTCTGCCGCCTCACTATCCAAGACCTAGCTCTGCTATGAGTTCTAATATGGATAGCTCATATGGACTAGTCAGTTCCATGGGAATGGGTCAGCACACTGAAGCAAAAAGTTTCAGCTCGCAACTTATTAGGCAAAGTAGCTCGCCTGCTGGACTTTTCACCAACATCCCTTTTCAAAACGGATATAACACCATGAAAGGGCTTGGAATCAGCACAGGTGCTCATGGAAATATGATTGAAGTAAGTCCCTCTATGAATGGATTGAAGAATCGAACTGGTTTCCCTTCAAGAACATTTTCATCCTTGGGGATGTTGTCTCAGATCTCTGAAACAGGTAATGAAAGCATCAATGGTACTACTAGCCCTGAGGAAAGTGAAAATTGCGAAACTGGAGTTTATGGCAGTGGATTAACTTATGATGCTTGGAATGATTCATCCATTTTCTCAGACAATATTACTGGCTTGAAAAGACAGCGAAGTAACGACCGTAAGACTGGAGGGCTTGGAAATCATGTTCAACTATTAACCCACCACTTGAGTTTGCCAAAAGCTTCGTCTGAGATGGTTTCTGTGGACAAGTTTCTTGAATTTCAAGATTCCGTTCCTTGTAAAATTAGAGCAAAGCGTGGCTGTGCTACTCATCCTAGAAGCATTGCTGAACGGGTGAGAAGAACTCGAATCAGTGAAAGGATGAGAAAGCTGCAGGAGCTCGTCCCGAAGATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCCGTTGAGTACATCAAAGACCTGCAGAAGCAATTCAAAACGCTTAGGGATAATCGAGCCAAATGCACATGTTTAAGCATGCAGAAGCAGGTCACGAATCAAATAGTCTGA 1188 0.4411 MDSRTNQSNLHQHHQNHQPSSGLLRFRSAPSSLLVNFTGPASGDFSLNEGNPCEVSESQNLMSRFATCSEHTDSDSPHFQEFEEKSSPATSIEVPLKLVNSQQVFCPLPPHYPRPSSAMSSNMDSSYGLVSSMGMGQHTEAKSFSSQLIRQSSSPAGLFTNIPFQNGYNTMKGLGISTGAHGNMIEVSPSMNGLKNRTGFPSRTFSSLGMLSQISETGNESINGTTSPEESENCETGVYGSGLTYDAWNDSSIFSDNITGLKRQRSNDRKTGGLGNHVQLLTHHLSLPKASSEMVSVDKFLEFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPKMDKQTNTADMLDLAVEYIKDLQKQFKTLRDNRAKCTCLSMQKQVTNQIV* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00780 395 Gene3D - 318 392 IPR036638 GO:0046983
Pte13g00780 395 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 390 - -
Pte13g00780 395 FunFam Transcription factor bHLH130 family 318 388 - -
Pte13g00780 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 381 IPR036638 GO:0046983
Pte13g00780 395 SMART finulus 323 373 IPR011598 GO:0046983
Pte13g00780 395 Pfam Helix-loop-helix DNA-binding domain 322 368 IPR011598 GO:0046983
Pte13g00780 395 CDD bHLH_AtbHLH_like 322 375 IPR045239 -
Pte13g00780 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 367 IPR011598 GO:0046983
Pte13g00780 395 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00780 Pte-Chr13 6418309 6421315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00780 21 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.728 5.27e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte13g00780 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00780 - - qsa:O6P43_006556 439.113