Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00773 ATGAGTTCGAACTACGTAGCTGAGCTCAACTCCTCTTCTTCTTCGGAGCTCAACTCCTCCAGCTGCACTGCTGATCAGTCGCTCAATGGGTTGAAATTTGGAAAGAAGATTTATTTTGAGGATGCGGGTTTTGCAGCTCCGGCCAAATCAGGTGGTGGGTTATCTGCGTCTCTATCAACCCCACCAAAGAAGGTAAAGGTTGTTGCCGTTCAAGGGGCGGCTCAGCCTCCAAGGTGTCAGGTCCAGGGCTGTGAAGTGGATCTGAGCGATGCTAAAGCTTACTATTCCAGGCATAAAGTATGTTCCATGCACTCAAAATCACCTTCAGTTGTTGTTGCTGGACTGGAGCAAAGATTTTGCCAACAGTGTAGTAGATTTCATCAACTTCCTGAATTTGATCAAGGAAAACGAAGCTGCCGCAGGCGCCTTGCCGGCCACAATGAGCGTAGGAGAAAACCTCCACCTGGATCCTTGTTCAACTCTAATTATGGACGGCTCTCTTCATCTCTCTTTGAAAGTCATGGAAGAGTGGGCGGCCTTCTTATGGACTTCACCGCATACCCTAAGCTTACTACAAGGGATTCATGGCCAAGTTCCAAGTGTCCTGAGCAGGTCTTTGGAAGCCAAACCTCCTCAGTCACAGGAAAGAGGCTTCCTCGTTGTTTGCAAGGCAACTCGGAGAGTCCTCCATATGACATTTTCATGCAGCGGTCAATCGGAGGCACAAGTGTCCCTATTGAGAAAATTCATCCAGGAGAATGCTTCACAAGCGCCACAGACTCCAGCTGTGCTCTCTCTCTTCTGTCAAATCAACCGTGGGGCTCGAGCCAAGCATTTCATGTTGGGTTGAACAATTTGGTGAACTTTGAAGGAACAGCTACAACACAAACCATTGCCCCACCTCCTCACAGTACTCCCATCCATAACATTCCAAGCGCCTTCTGGTGTTTCAAGGGTAATGAGGCTGGTGGAAGTTCGCATGAGACTGTCACTGATATCGGTTTAAGCCAAATTACAAAGCCTTTTGCTATTCAACGCTCTGATTTTACCAGTACCCTCGATAAACAATGGTTGTCACATGTCACTCACACTGTCTCCAAATCCAATTACCTCAACTTTGTCCTGCGTGTAAAGAACATGTTTTCATTTGTCTCTTTCACGGTTGTACAGGCCTTCTTAACTACAACTTCAAGGGCAGGCTTCAACCGTGAAGGCCAAAATACAAGAATCCCTTGGTGGTTTGGCATCTTCGAAAACTAG 1260 0.4722 MSSNYVAELNSSSSSELNSSSCTADQSLNGLKFGKKIYFEDAGFAAPAKSGGGLSASLSTPPKKVKVVAVQGAAQPPRCQVQGCEVDLSDAKAYYSRHKVCSMHSKSPSVVVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLFNSNYGRLSSSLFESHGRVGGLLMDFTAYPKLTTRDSWPSSKCPEQVFGSQTSSVTGKRLPRCLQGNSESPPYDIFMQRSIGGTSVPIEKIHPGECFTSATDSSCALSLLSNQPWGSSQAFHVGLNNLVNFEGTATTQTIAPPPHSTPIHNIPSAFWCFKGNEAGGSSHETVTDIGLSQITKPFAIQRSDFTSTLDKQWLSHVTHTVSKSNYLNFVLRVKNMFSFVSFTVVQAFLTTTSRAGFNREGQNTRIPWWFGIFEN* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00773 419 FunFam Squamosa promoter-binding-like protein 14 70 140 - -
Pte13g00773 419 Pfam SBP domain 79 152 IPR004333 GO:0003677
Pte13g00773 419 ProSiteProfiles Zinc finger SBP-type profile. 76 153 IPR004333 GO:0003677
Pte13g00773 419 Gene3D - 70 140 IPR036893 GO:0003677|GO:0005634
Pte13g00773 419 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 10 324 IPR044817 GO:0003677
Pte13g00773 419 SUPERFAMILY SBT domain 77 158 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00773 Pte-Chr13 6335493 6339225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00773 31 371 SBP-box Gene Family AT2G42200 38.275 2.41e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte13g00773 SBP 7.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00773 - - qsa:O6P43_006579 423.32