Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00759 ATGGGAGACGAGACATCTGATGCGATGAACCTGGACTTGAACCTGGGTCCTGCTCCAGAACCCGCTGAAGGCTCAGCTCCAAATGATCCTGTGAACTTAGATGACTGGATCGATGGTCCTATTGATAGATGGAGTGGACCTACGAGGCTCAGAGCGCCACAAAGGCGGAGATGGCGCCAGCTTCATATCATGCCTCAATCTCAAAGCATTTCAATGGATTTAAATCAGCTTTTGGTCAACTCTGGCAATGGTAGCATGTTACAAGCGGGTGAAGGTAGTGTGGCAGCTGAGGGAAGAACGGAAGAGATACCTAAAACTTGTGATAATGCAGGTGTCACTGTAGATGAGACTTCTCCTGAAAAGGAGGATGTTGAAAAGGGTGATGTTAATGATGGGAGCTTTTTTGATTGTAATATTTGTCTGGACTTGGCTAAGGATCCTGTCGTCACTTGTTGTGGTCACTTGTTTTGCTGGCCTTGCCTTTACCGATGGTTACATGTGCATTCTGATGCTAAGGAGTGTCCAGTATGCAAGGGAGAGGTTACAACAAAAAATGTAACTCCCATATATGGTCGTGGAAATAATACTCGGGAATCTGAGGAGGAGGATCCAAGTCTGAATATCCCTCTCCGGCCCCAAGCAAGGCGTGTGGAGAGCTTGAGGCAAACCATTCAGAGGAATCCATTAGCACTCCCTGTGGAGGAGATGATTCGTCGCCTTGGAAACAGAATTGACCTTCGGGATATTGTTCAGCCAAATGAACTGGATGTACGTGAATCAGCTGAAAGAACAACTTCATTGTTGAATAGGTTTTTGACAGCTCGAGGACTTCGTAGAGAACAAAATCTGGGTGCCAGCCCTGATGAAGTGGTTGATCTAACTCAAAGCAACCCTGGTGATAACCATAGGGTTCAATCTGTATTTCTGCGGAGAACACATGCACAAAGAGCAAATCCTGGACCCCCCTCATCTGCATTAAACTCTGCTGAAAGGCTAGTTGAGGCATACTACCGTGGCCACCACATAGGAAGGAATCGAGAACGGGCTCCTGCTGTTGATGATCGTGATTCCTTTTCGAGCATTGGTGCTGTTATAAATTCAGAGAGTCAAATGGATGCCGCTGTGGAGATTGATTCCCTTGTATCTCTATCAACCTCCTCTTCAAGAAGAAGAACTGACGCATCCAGAGTATTGGATGTGGAAACTGCAGATTCTCGTGCACCCCGAAGGCAAAGGTTGAGTTGA 1245 0.4667 MGDETSDAMNLDLNLGPAPEPAEGSAPNDPVNLDDWIDGPIDRWSGPTRLRAPQRRRWRQLHIMPQSQSISMDLNQLLVNSGNGSMLQAGEGSVAAEGRTEEIPKTCDNAGVTVDETSPEKEDVEKGDVNDGSFFDCNICLDLAKDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTTKNVTPIYGRGNNTRESEEEDPSLNIPLRPQARRVESLRQTIQRNPLALPVEEMIRRLGNRIDLRDIVQPNELDVRESAERTTSLLNRFLTARGLRREQNLGASPDEVVDLTQSNPGDNHRVQSVFLRRTHAQRANPGPPSSALNSAERLVEAYYRGHHIGRNRERAPAVDDRDSFSSIGAVINSESQMDAAVEIDSLVSLSTSSSRRRTDASRVLDVETADSRAPRRQRLS* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00759 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 115 297 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte13g00759 414 MobiDBLite consensus disorder prediction 392 414 - -
Pte13g00759 414 SUPERFAMILY RING/U-box 133 190 - -
Pte13g00759 414 MobiDBLite consensus disorder prediction 1 29 - -
Pte13g00759 414 SMART ring_2 137 177 IPR001841 -
Pte13g00759 414 MobiDBLite consensus disorder prediction 384 414 - -
Pte13g00759 414 CDD RING-HC_AtRMA-like 135 178 - -
Pte13g00759 414 ProSitePatterns Zinc finger RING-type signature. 152 161 IPR017907 -
Pte13g00759 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 226 IPR013083 -
Pte13g00759 414 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Pte13g00759 414 FunFam Zinc finger family protein 118 191 - -
Pte13g00759 414 Pfam Zinc finger, C3HC4 type (RING finger) 137 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00759 Pte-Chr13 6220585 6223134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00759 1 405 C3H Transcription Factor Family AT3G58030 52.184 1.10e-125 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00759 K10666 - qsa:O6P43_005826 542.347