Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00757 ATGGAGCTTAGTTTGAGCTTAGGTGAGTCTGCAACTCCATTCTCGTTTCGTGACAAGACCGCCAAGTTGCATAGTAAAGATCTTAGCTTCTGCATAGGGTTAGGGGGAGGTGCTGGTATTACCGGAAAAGCCTCTGAAAACCACCGAGATACTCGTACCAATAGTCTTGACGGTAGAGATCATGCAACAAGGGCTTTGTCAGATCCACCTCTTCAGCTCGACCTTCTGCCCTCTTCGCCTGTTCCTCGTAGTCAACACCCCTCTTCAACTCTTCGGATTCCTTGGCTCACTGCTACATTGGCTGGTGAAAGAGTTTCATCTGAGGAGCAGACGAGAGGATTGGACATGAACCGGTCCACAGCGCAAACGGAAGAAGCAGACGATGGTGCGGCACTCTCATCTCCTAACAGCGCAATGTCATCCCTTCAAATGGAGTTCTGTGTAAGAAACAATGGTTATAATGCTGGCAAAGGAAACAGAGATACTGAAGTGGACGCTGAAAGGGGCAGTTCAAGAGGATTAAGCGACGATGAGGAGAACGGCTCCACTAGAAAGAAACTGAGACTCTCAAAAGAACAGTCAGCTTATCTCGAGGAGAGCTTCAAAGAGCACACAACTCTTAACCCCAAACAAAAACTAGCTCTGGCGAAGCAGTTGAATCTTCTCCCTCGCCAAGTGGAAGTTTGGTTTCAAAATAGGAGAGCAAGGACCAAGTTGAAGCAGACGGAAGTAGATTGTGAATACTTGAAGCGATGCTGTGAGACTCTGACAGAAGAGAACAGGAGGTTACGGAAGGAACTGCAAGAACTTAGAGCTCTGAAATCATCTCAGCCATTTTACAAGCAACTTCCTGCCACAACTCTAACCATGTGTCCTTCTTGTGAACGAGTGGCCACCAAATCATCCTCTTCATCTGTCACTGCCTTTGGAATTACCTCATCCTATCCAACACCCTCGTCTAACATCACTTCCGGCAACATCGATGGTGCAACCATTCCCGTGGACTTGTCACTCAGTAAGCCAAAAATATTCCCACTAAATCATGGACCTTCAAACATTCAGCAATCGTGCTAG 1074 0.4711 MELSLSLGESATPFSFRDKTAKLHSKDLSFCIGLGGGAGITGKASENHRDTRTNSLDGRDHATRALSDPPLQLDLLPSSPVPRSQHPSSTLRIPWLTATLAGERVSSEEQTRGLDMNRSTAQTEEADDGAALSSPNSAMSSLQMEFCVRNNGYNAGKGNRDTEVDAERGSSRGLSDDEENGSTRKKLRLSKEQSAYLEESFKEHTTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLRKELQELRALKSSQPFYKQLPATTLTMCPSCERVATKSSSSSVTAFGITSSYPTPSSNITSGNIDGATIPVDLSLSKPKIFPLNHGPSNIQQSC* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00757 357 Coils Coil 246 276 - -
Pte13g00757 357 SUPERFAMILY Homeodomain-like 174 241 IPR009057 -
Pte13g00757 357 CDD bZIP 233 272 - -
Pte13g00757 357 Pfam Homeobox associated leucine zipper 240 274 IPR003106 GO:0006355|GO:0043565
Pte13g00757 357 MobiDBLite consensus disorder prediction 39 138 - -
Pte13g00757 357 MobiDBLite consensus disorder prediction 78 95 - -
Pte13g00757 357 MobiDBLite consensus disorder prediction 45 64 - -
Pte13g00757 357 SMART HOX_1 182 244 IPR001356 GO:0003677
Pte13g00757 357 Gene3D - 188 238 - -
Pte13g00757 357 MobiDBLite consensus disorder prediction 153 189 - -
Pte13g00757 357 Pfam HD-ZIP protein N terminus 69 142 IPR006712 GO:0005634
Pte13g00757 357 SMART halz 240 283 IPR003106 GO:0006355|GO:0043565
Pte13g00757 357 CDD homeodomain 184 241 IPR001356 GO:0003677
Pte13g00757 357 ProSiteProfiles 'Homeobox' domain profile. 180 240 IPR001356 GO:0003677
Pte13g00757 357 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 305 - -
Pte13g00757 357 ProSitePatterns 'Homeobox' domain signature. 215 238 IPR017970 GO:0000981|GO:0006355
Pte13g00757 357 FunFam Homeobox-leucine zipper protein HAT22 188 234 - -
Pte13g00757 357 MobiDBLite consensus disorder prediction 112 138 - -
Pte13g00757 357 Pfam Homeodomain 184 238 IPR001356 GO:0003677
Pte13g00757 357 MobiDBLite consensus disorder prediction 160 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00757 Pte-Chr13 6211588 6213330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00757 70 304 Homeobox Transcription Factor Family AT5G47370 55.187 1.13e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte13g00757 HD-ZIP_N 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00757 K09338 - qsu:112028347 383.259