Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00748 ATGAGAAACTCATGGGCAGATTCTGTAGCAAATTCTGAAACTGAGAATGCAACAACTGGTTCTTCTGATACCATGTGTCGGCCTACCAAGCCGGCTTATGTCCCCCCGCATCTTCGTAACAGGCAACGGTCTTCTGAGTCCCCAGCAACCTCGAATTCTTCTATGGTAGCAAATAATGATCCAGTCCATCACAGCGGAAATACTGCTGCATCTCATCGAGTAAATCACAGTGGAACTACTGGCGGGTCCCAATTTCTTGCTGCCTCTAGGCCTGATTCAATGCGCTATGGTTCTGGTTCTGGTGGTGGTTGGAATAATAGTAGAGGTGGAGGGTGGGATCGTGGGAGGCAGCAAGAGGTGAATCCTTTTGATAATGACACGGAACAATCATTCGGTGAGCAAGAAAACACTGGTATCAATTTTGATGCCTATGAAGATATCCCAGTAGAGACAAGCGGGGAAAATGTTCCCCCACCTGTTAACACATTTGCTGAGATAGACTTGGGTGACGCCTTGAATGAAAATATTAGGAGGTGCAAGTATGTAAAACCAACACCAGTTCAGCGTTATACCATACCGATTTCCCTTTCAGGGAGAGATTTGATGGCTTGTGCTCAAACGGGGTCTGGGAAGACAGCTGCTTTCTGCTTTCCTATTATCAGTGGAATCATGCGGGAGCAACCTTATATACAAAGGCCTCGAGTGCCGCGAACTGCATTCCCGCTAGCTCTTATTCTGTCTCCAACCAGGGAGCTTTCATGCCAGATACACGACGAGGCTAGAAAGTTTTCCTATCAAACTGGTGTTAAGGTGGTTGTTGCTTATGGAGGAGCGCCAATTTCCCAACAGTTGAAAGAGCTTGAAAGAGGGGTTGATATTCTTGTGGCCACCCCTGGGCGATTGGTGGATTTGCTTGAGAGGGCTAGGGTAAATTTGCAGATGATCAGATATTTGGCACTTGACGAGGCAGATCGGATGCTGGATATGGGATTTGAGCCTCAAATAAGAAAAATAGTGGAACAAATGGACATGCCACCGCCAGGTGTGAGACAAACAATGCTGTTTAGTGCCACTTTTCCAAAAGAGATACAGAGGCTAGCTTGTGATTTTCTTTCCAAATATGTGTTTCTGGCTGTCGGAAGGGTTGGTTCCAGCACAGATCTTATTGTTCAAAGGGTTGAGTACGTTCTTGAGTCTGATAAAAGGAGCCACCTCATGGACCTTCTTCATGCTCAGAGGGAAAATGGAACTCACGGAAAGCAAAGTCTGACATTAGTATTTGTGGAAACGAAGAAGGGAGCTGACTCGTTAGAATATTGGTTGTGCATGAATGGGTTCCCCGCAACTTCCATTCATGGTGACAGATCGCAACAAGAAAGAGAACTAGCGCTGAGGTCATTTAAGACCGGGAAGACACCCATTTTAGTGGCAACAGATGTTGCAGCTCGCGGTCTTGATATACCTCATGTTGCACACGTGGTAAACTTTGATCTGCCCAATGATATTGATGATTATGTACATAGGATTGGTCGAACGGGGAGAGCTGGCAAAACAGGACTGGCTACAGCCTTCTTTAATGAAAACAATCAGTCATTAGCTCGGCCATTGGCGGATCTAATGCAAGAGGCAAATCAGGAAGTGCCTGCTTGGCTTACACGTTTTGCAGCAAGAGCTTCTTATGGTGGCGGCAAAAATCGAAGATCAGGAGGTCGATTTGGTGGCCGTGATTTTAGAAGGGAGGGTTCATCGAACAGAGCAACGGACTACTACGGGACACCAGCTGGTGGGTATGGGGTTACTGGAGGTTATGGTGGGGTATACGATGCCGGAGTTACTAGTGCTTGGGACTGA 1851 0.4679 MRNSWADSVANSETENATTGSSDTMCRPTKPAYVPPHLRNRQRSSESPATSNSSMVANNDPVHHSGNTAASHRVNHSGTTGGSQFLAASRPDSMRYGSGSGGGWNNSRGGGWDRGRQQEVNPFDNDTEQSFGEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNENIRRCKYVKPTPVQRYTIPISLSGRDLMACAQTGSGKTAAFCFPIISGIMREQPYIQRPRVPRTAFPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPISQQLKELERGVDILVATPGRLVDLLERARVNLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLACDFLSKYVFLAVGRVGSSTDLIVQRVEYVLESDKRSHLMDLLHAQRENGTHGKQSLTLVFVETKKGADSLEYWLCMNGFPATSIHGDRSQQERELALRSFKTGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNQSLARPLADLMQEANQEVPAWLTRFAARASYGGGKNRRSGGRFGGRDFRREGSSNRATDYYGTPAGGYGVTGGYGGVYDAGVTSAWD* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00748 616 SMART helicmild6 435 516 IPR001650 -
Pte13g00748 616 Pfam Helicase conserved C-terminal domain 401 516 IPR001650 -
Pte13g00748 616 Gene3D - 117 379 IPR027417 -
Pte13g00748 616 FunFam ATP-dependent RNA helicase RhlB 380 559 - -
Pte13g00748 616 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 161 189 IPR014014 GO:0003724
Pte13g00748 616 MobiDBLite consensus disorder prediction 40 87 - -
Pte13g00748 616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 555 IPR001650 -
Pte13g00748 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 531 IPR027417 -
Pte13g00748 616 CDD DEADc_DDX3_DDX4 162 383 IPR044763 GO:0003724|GO:0005524
Pte13g00748 616 Gene3D - 380 560 IPR027417 -
Pte13g00748 616 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 125 555 - -
Pte13g00748 616 SMART ultradead3 180 392 IPR014001 -
Pte13g00748 616 MobiDBLite consensus disorder prediction 1 26 - -
Pte13g00748 616 MobiDBLite consensus disorder prediction 560 585 - -
Pte13g00748 616 Pfam DEAD/DEAH box helicase 185 366 IPR011545 GO:0003676|GO:0005524
Pte13g00748 616 MobiDBLite consensus disorder prediction 1 134 - -
Pte13g00748 616 FunFam Probable ATP-dependent RNA helicase DDX4 124 379 - -
Pte13g00748 616 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 377 IPR014001 -
Pte13g00748 616 MobiDBLite consensus disorder prediction 569 583 - -
Pte13g00748 616 CDD SF2_C_DEAD 389 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00748 Pte-Chr13 6133595 6138397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00748 159 548 Eukaryotic Initiation Factors Gene Family AT3G19760 30.691 3.24e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00748 K11594 - cpap:110811694 917.531