Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00743 ATGTCTCGTTTCTGGACACAGGGTGATTCTGACACCGAGTCAGATGCTACAGAAATTTCTGATGAAAATGACAACATTGTAGTAGGCGATGGCCCAACTGGAGGAAGCAGTCGATATTTGACTGGGAATGCTAGTGACAGTGATGATTCTGATGGCCAAAAGCGCGTTGTCAGGTCAGCTAAGGATAAGAGATTCGAAGAGCTATCTGCTACTGTTGATCAGATGAAGAATGCTATGAAGATCAATGATTGGGTGAGCCTGCAAGAGAGCTTTGATAAGATTAACAAGCAATTGGAGAAGGTTTTGCGGTTTACTGAGTCTGAGAAGGTCCCAAATATGTACATTAAGGCACTTGTTATGTTAGAGGACTTTTTGACACAGGCTCTGGCAAATAAAGATGCTAAAAAGAAGATGAGCAGCAGTAATGCCAAAGCCTTAAACTCAATGAAGCAGAAGCTTAAGAAGAATAACAAGCAATATGAGGATTTGATTAACAAGTACAGGGAGAATCCTGAGAGTGAGGAAGTTAATGATGAAGAAGAAACAGAAGATGACGATGACGATGACGTAGAGTCTGTTGAAGAGTATCCTGATAAGATTTCCATGAAATCAGGCTCTGACAATGAACAAGGAAACGAAAATGAAGATGATGTGGATGGTCCCTGGATCCAAATGCCTAACATTAAAGATAAACTTAGGCAATTTATGAAAAATCCAAGTGAGATCACATGGGATACAGTTAATAAGAAATTCAAAGAGATTGTGGCTGCTAGGGGTAAGAAAGGGACTGGACGGTTTGAGCAGGTTGAACAACTTTCCTTTTTAGCAAAGGTTGCCAAGACACCTGCTCAGAAACTTGAAATTATATTCAGTGTTGTTTCTGCTCAGTTTGATGTCAATCCAGGTCTGAATGGACATATGCCAATAAATGTTTGGAAGAAATGTGTTCAGAACATGTTGGTAATTCTGGATATACTTGTCCAACATCCTAATATTGTGGTGGATGACTCTGTTGAGCCCGATGAAAATGAAACTCAGAAGGGACAAGACTATGATGGTACGATTCGAGTTTGGGGAAATTTGGTAGCCTTCCTAGAAAAGGTAGATACTGAATTCTTCAAGAGTCTACAATGCATTGATCCACATACTCGTGATTATGTTGAGAGGTTGAGGGACGAACCCCTCTTTTTGGTTCTTGCTCAAAACGTTCAGGATTATCTTGAACGAGTTGGAGATTTTAAAGCATCTGCTAAGGTGGCTCTCAGGCGCGTTGAACTTATTTATTACAAACCACAGGAGGTTTATGCTGCCATGAGGAACCTAGCAGAGCAGACACAGGATGATGATATTGGAAATACAGTTGACGGGACCAAGTTGGCTGAGGAAGCCAAAGGTCCTTCTGCCTTCGTTGTTACTCCTGAGGTTGTTCCTCGCAAGCCAGCCTTTCCTGAAAACAGTCGGACCCTTATGGATATTTTGGTATCTCTCATTTATAAATACGGAGATGAGAGAACTAAAGCTCGGGCTATGCTTTGCGATATATATCACCATGCTCTTTTGGATGAGTTTTCTACATCCCGTGATCTGCTTCTTATGAGTCATTTACAGGATAGCATCCAGCTCATGGACATATCGACTCAGATACTCTTCAACCGTGCTATGGCACAGCTTGGTCTTTGTGCATTTCGAGCGGGATTGATTTTGGAAGCACATGGTTGCCTCTCTGAACTTTACTCTGGTGGAAGGGTGAAGGAGCTGCTTGCACAAGGTGTTTCACAGAGCAGATATCACGAGAAAACTCCAGAACAGGAAAGATTGGAAAGGAGACGTCAGATGCCATATCATATGCACATAAATCTTGAACTCTTGGAGTCGGTTCATCTAATATGTGCGATGCTGCTAGAAGTCCCCAACATGGCGGCCAATATTCATGATGCAAAGCGCAAGGTCATTAGTAAGACTTTCCGTCGCTTGCTTGAGGTTAGTGAAAAGCAAACATTCACTGGGCCTCCTGAAAATGTTAGAGACCATGTGATGGCTGCCACAAGAGCACTTACCAAAGGAGACTTTCAAAAGGCATTTGATGTCATCAGTGCACTTGATGTCTGGAAATTTGTCAGAAATCGGGAGGCTGTGCTTGAGATGCTGAAAGACAAAGTCAAAGAGGAGGCTTTAAGGACTTACCTTTTAACTTTCTCGTCATCTTACGATTCTTTGAAGTTGGACCATCTCAGCAAAATGTTTGACCTCTCAGTGACACGTGCTCATAGTATTGCGAGTAAGATGATGGTCAATGAGGAGCTTTATGCAAGCTGGGATCAACCGACAGGGTGCATTGTCTTCCATGAAACCGGACACTCTAGGTTGCAAGCTTTATCGTTCCTGTTCACCGAGAAGTTATCTGTAATGGCTGAGGCTAACGAAAGAGCTTTGGAGGGAAGGATTGGTGGCGGTGGATTAGAGTTGCCCCCAAGGCGTAGAGACAACCAAGAGTACACTGGCACATCGTCATTAAGTGGAAGGTGGCAAGAGAACTTGTCCTTCAATCAACAGAAGCAAGGTGGTGGTGGTGGACGAGCAGGCTATGGTGGGGGAAGACCAATGTCTTTCAGTCAGGCATCTGGGGGTGGATATTCAAGGGACCAAACTGGCCAAGGACGGTTTGGGGGAGGCTATCAGAGCAGTAGAGGTTCTGGGTCAGGTAGGCCTCATAGTTCTGCATCACGGGGATCCCAAGAAATGTCAACCCGCATGGTTAGTCTAAATAGAGGGGTACGTGCATAA 2784 0.4371 MSRFWTQGDSDTESDATEISDENDNIVVGDGPTGGSSRYLTGNASDSDDSDGQKRVVRSAKDKRFEELSATVDQMKNAMKINDWVSLQESFDKINKQLEKVLRFTESEKVPNMYIKALVMLEDFLTQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKYRENPESEEVNDEEETEDDDDDDVESVEEYPDKISMKSGSDNEQGNENEDDVDGPWIQMPNIKDKLRQFMKNPSEITWDTVNKKFKEIVAARGKKGTGRFEQVEQLSFLAKVAKTPAQKLEIIFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQHPNIVVDDSVEPDENETQKGQDYDGTIRVWGNLVAFLEKVDTEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQDYLERVGDFKASAKVALRRVELIYYKPQEVYAAMRNLAEQTQDDDIGNTVDGTKLAEEAKGPSAFVVTPEVVPRKPAFPENSRTLMDILVSLIYKYGDERTKARAMLCDIYHHALLDEFSTSRDLLLMSHLQDSIQLMDISTQILFNRAMAQLGLCAFRAGLILEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLICAMLLEVPNMAANIHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRALTKGDFQKAFDVISALDVWKFVRNREAVLEMLKDKVKEEALRTYLLTFSSSYDSLKLDHLSKMFDLSVTRAHSIASKMMVNEELYASWDQPTGCIVFHETGHSRLQALSFLFTEKLSVMAEANERALEGRIGGGGLELPPRRRDNQEYTGTSSLSGRWQENLSFNQQKQGGGGGRAGYGGGRPMSFSQASGGGYSRDQTGQGRFGGGYQSSRGSGSGRPHSSASRGSQEMSTRMVSLNRGVRA* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00743 927 Pfam PCI domain 654 783 IPR000717 -
Pte13g00743 927 MobiDBLite consensus disorder prediction 154 173 - -
Pte13g00743 927 MobiDBLite consensus disorder prediction 814 927 - -
Pte13g00743 927 MobiDBLite consensus disorder prediction 872 919 - -
Pte13g00743 927 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 1 862 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pte13g00743 927 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 715 803 IPR000717 -
Pte13g00743 927 SUPERFAMILY "Winged helix" DNA-binding domain 713 785 IPR036390 -
Pte13g00743 927 MobiDBLite consensus disorder prediction 133 223 - -
Pte13g00743 927 Coils Coil 143 170 - -
Pte13g00743 927 MobiDBLite consensus disorder prediction 174 194 - -
Pte13g00743 927 MobiDBLite consensus disorder prediction 829 854 - -
Pte13g00743 927 ProSiteProfiles PCI domain profile. 614 786 IPR000717 -
Pte13g00743 927 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 921 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pte13g00743 927 MobiDBLite consensus disorder prediction 1 60 - -
Pte13g00743 927 MobiDBLite consensus disorder prediction 133 153 - -
Pte13g00743 927 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 646 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pte13g00743 927 Gene3D - 715 789 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00743 Pte-Chr13 6089576 6093465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00743 2 928 Eukaryotic Initiation Factors Gene Family AT3G56150 67.694 0.0 1179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00743 K03252 - cave:132191463 1326.23