Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00729 ATGGGAAATAACTGTGTTGGTTCCAAAGCTTCTGATGATGGGATATTTCAGTCTATGTCGAACTCTGATTGGTGGTCTCGATCAACAAGGGGTATGTTTGCTTACACTAATAAAGGAATTGCTGATGTATCGCAATTTGAAGGTAAGAAGTTTAGTAGTTCTCACACTGTTGAAGACAAGGCTCCAGAGCGAGTGAAGATAATCAAGGAAGATAGTAATACAGTATATGTGCAAACTCAAACAGCTAACGAGGAGGTTAAACTAGCACAGTTGTCACAGCAAGATGAGGAGGCTCCGAAATTGTCAGAACCTACAACAGATAAAAAGGAGACAAAATCAGCACAATTTCCTCAACGTGATAAAGAGACTCTTAATTTGTCAGAAACCATAACAGCTAAAGAGGAGACTATACCAGCACTATTGCCACAAGTAGATAAAGAGGTTCCTAAATCGTCAGAACCAGTGAAGTCTGTGCAAGAGGGGGATATTCTGACGGATGTGGTAGGGAGTCCGTACTATGTTGCACCTGAAGTTCTGTGCAGGCATTATGGTCCAGAAGCTGATGTGTGGAGCGCCGGTGTGATAATTTATATTTTGTTATCTGGGGTGCCTCCTTTTTGGGGTGAAACGGAGCAAGAGATATTTCATGAAGTTTTGCATGGCGATCTTGACTTCAAATCTGAACCATGGCCCTCAATCTCGGAAAGTGCAAAAGACTTGATCAAGAGGATGCTCACAAGAGATCCTAGAAGACGAATAAAAGCACATGAAGTTTTATGTCACCCCTGGGTCCAAATTGATGGATTAGCTCCAGACAAACCTCTTGATTCTGCGATTTTGAGTCGCTTAAACCAGTTTTCTGCTATGGACAAACTTAAGAAAATGGCTCTAAGAATTATCGCAGAAAACCTTTCTGAAGAAGAAATTGCTGGGCTAAAGGAAATTTTCAAGATGATTGACACAGACAATAGCGGTCAAATTTCTTTTGAAGAGCTAAAAGTTGGATTAAAGAGATTTGGTGCAAATCTTAGTGAATATGAGATACGCCATCTGATGCAAGCTGCAGATGTTGATAACAATGGTACTATTGACTACGGGGAATTTATTGCGGCAACTCTGCATGTAAACAAGGTTGACCGGGAAGATCATCTATTTGCAGCTTTCTCCTATTTTGACAGAGATGGAAGTGGCTTTATCACTCAAGATGAGCTTCAACAAGCTTGTGAGGAATTCGGCATAGAAGATGTCCACTTAGAGGAAATGATCAAAGAGGTTGATCAGGATAATGATGGCAGAATAGATTATAATGAATTTGTAGCCATGATGCAGAAGGGCAACCCGAATTTGGGTAAGGGTCTTTGCAGTAGTAGTTTTAGAATTGGATATAGAGACGCACTCCCAGTGTTTTGA 1410 0.4078 MGNNCVGSKASDDGIFQSMSNSDWWSRSTRGMFAYTNKGIADVSQFEGKKFSSSHTVEDKAPERVKIIKEDSNTVYVQTQTANEEVKLAQLSQQDEEAPKLSEPTTDKKETKSAQFPQRDKETLNLSETITAKEETIPALLPQVDKEVPKSSEPVKSVQEGDILTDVVGSPYYVAPEVLCRHYGPEADVWSAGVIIYILLSGVPPFWGETEQEIFHEVLHGDLDFKSEPWPSISESAKDLIKRMLTRDPRRRIKAHEVLCHPWVQIDGLAPDKPLDSAILSRLNQFSAMDKLKKMALRIIAENLSEEEIAGLKEIFKMIDTDNSGQISFEELKVGLKRFGANLSEYEIRHLMQAADVDNNGTIDYGEFIAATLHVNKVDREDHLFAAFSYFDRDGSGFITQDELQQACEEFGIEDVHLEEMIKEVDQDNDGRIDYNEFVAMMQKGNPNLGKGLCSSSFRIGYRDALPVF* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00729 469 ProSiteProfiles EF-hand calcium-binding domain profile. 417 448 IPR002048 GO:0005509
Pte13g00729 469 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Pte13g00729 469 Pfam EF-hand domain pair 382 443 IPR002048 GO:0005509
Pte13g00729 469 Pfam EF-hand domain pair 312 372 IPR002048 GO:0005509
Pte13g00729 469 CDD EFh 383 443 IPR002048 GO:0005509
Pte13g00729 469 FunFam Calcium-dependent protein kinase SK5 174 269 - -
Pte13g00729 469 SUPERFAMILY EF-hand 303 444 IPR011992 -
Pte13g00729 469 MobiDBLite consensus disorder prediction 90 121 - -
Pte13g00729 469 SMART serkin_6 46 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00729 469 ProSitePatterns EF-hand calcium-binding domain. 320 332 IPR018247 -
Pte13g00729 469 SUPERFAMILY Protein kinase-like (PK-like) 159 279 IPR011009 -
Pte13g00729 469 PANTHER SERINE/THREONINE-PROTEIN KINASE 143 438 - -
Pte13g00729 469 MobiDBLite consensus disorder prediction 1 21 - -
Pte13g00729 469 ProSitePatterns EF-hand calcium-binding domain. 356 368 IPR018247 -
Pte13g00729 469 MobiDBLite consensus disorder prediction 100 117 - -
Pte13g00729 469 ProSiteProfiles EF-hand calcium-binding domain profile. 307 342 IPR002048 GO:0005509
Pte13g00729 469 Pfam Protein kinase domain 158 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00729 469 FunFam Calcium-dependent protein kinase 1 272 446 - -
Pte13g00729 469 ProSitePatterns EF-hand calcium-binding domain. 426 438 IPR018247 -
Pte13g00729 469 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Pte13g00729 469 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00729 469 ProSiteProfiles EF-hand calcium-binding domain profile. 343 378 IPR002048 GO:0005509
Pte13g00729 469 Gene3D Transferase(Phosphotransferase) domain 1 142 267 - -
Pte13g00729 469 Gene3D - 271 446 - -
Pte13g00729 469 SMART efh_1 383 411 IPR002048 GO:0005509
Pte13g00729 469 SMART efh_1 347 375 IPR002048 GO:0005509
Pte13g00729 469 SMART efh_1 417 445 IPR002048 GO:0005509
Pte13g00729 469 SMART efh_1 311 339 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00729 Pte-Chr13 5928583 5932551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00729 162 450 EF-hand Containing Proteins AT5G04870 78.893 1.87e-175 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pte13g00729 Pkinase 7.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00729 K13412 - cave:132191719 531.946