Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00727 ATGAATACCACATCTGACACCGGAGGATTCCTTGGTTCTAGCCACCTTGGTGGTTTTGGCTATGGAGTAGGATGCTCAGTTGGAATTCTCCTCCTCATCACAACCATCACCCTTGCTTCTTATTTCTGCACTAGGAACCAGCAGCCACCAGAACCATCCCCTCCGAGAATTTCCCATGTGGTCATGGCACCAGCTGCAAATGAGCATTGCGTCATGGATGTAGGCCTAGATGAAGCCACTCTCTTGAGCTATCCAAAGCTGCTGTATTCCGAAGCCAAGATCCGGAAGTCAGATTCTACAGCAACTTGTTGTTCCATATGTCTGGCCGATTACAAGAGCTCTGATATGCTTCGTGCGTTGCCTGATTGTGGGCACCTCTTCCATGTCAAATGTGTGGACCCGTGGTTGAGACTACACCCCACATGTCCAGTCTGCAGAACATCTCCCATTCCAACACCACTCTCAACCCCGCTGGCTGAAGTGGTTCCATTGGCAATGAGGAGGGATTCATAA 513 0.499 MNTTSDTGGFLGSSHLGGFGYGVGCSVGILLLITTITLASYFCTRNQQPPEPSPPRISHVVMAPAANEHCVMDVGLDEATLLSYPKLLYSEAKIRKSDSTATCCSICLADYKSSDMLRALPDCGHLFHVKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLAMRRDS* 171
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00727 170 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 160 IPR045899 -
Pte13g00727 170 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Pte13g00727 170 SMART ring_2 104 145 IPR001841 -
Pte13g00727 170 Pfam Ring finger domain 104 146 IPR001841 -
Pte13g00727 170 SUPERFAMILY RING/U-box 87 151 - -
Pte13g00727 170 CDD RING-H2_EL5-like 103 146 - -
Pte13g00727 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 150 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte13g00727 Pte-Chr13 5912106 5912618 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00727 6 165 C3H Transcription Factor Family AT2G35910 60.870 1.10e-56 175
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00727 - - qsa:O6P43_009684 241.506