Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00725 ATGGCCATGAACACTGTTTGTCTCAAAGATCATGACGGGATTGCCCATAACTCCATTGGACAGTTGTCATCTGTAACTTCAGCCCCTTGGTGGAGTTCCTTTGGATCCCAATTGGGTTACGGGGACTCATGTAACCATACGAAGTCTTTTTCTCTGGAGCTCCCCAACTGTGGGGACCAATTTACTGCCACTAAGACAGCAGGGAGAGATGGTGAACAAGGAACTGATAAAGGGAATACCACTCACTTCGCTATCTTTCCTGTAAACAATCCTGGGGAAGTGTATGTTACAAAGCACTACATGGGACACGGTGACGCTCAAAAACCTAACTCAACCATCTCTTTGCAATCATCTGTTCCTGATCACCGTGCTCGGTTTGAGCTAGGATTTGGTCAGCCTATGGTCTGTGGAAAATACCCTTATGTGGACCAATATTATGGACTCTTCTCAGCTTATGGACCTCAGTTCTCGGGCCGCATTATGCTACCACTTAACTTGACAACTGATGATGGACCAATATATGTAAATGCTAAGCAGTACCATGGAATCATCAGACGCCGGCAATCTCGTGCAAAAGCTGAGCTGGAGAACAAATTGACTAAAGCTCGTAAACCCTATATGCACGAATCGCGCCACCGTCATGCAATGCGCCGACCTAGGGGAAGTGGGGGTCGTTTCCTGAACACCAAGAGTTTGGATGGTGGGAAAAGCACCAATGAAGCAAATGGAATTGGTGGAGGAAAAACGATGCATCCTGCTGGTTTGCATCATGCAGTCGTTCAGAGTGGGAGAGCAGGGAACAGAACTGTTGATCGACAAGCTTTGCAGCCTACTGGTTCGCATAGTTCTGAATTCCAACAATCAGATGGCGGGACTATAAATTCATCCAAGGATACGAATGGAAGCAATTCAAACATTTCAGGATCAGAGGTCACAAGCATGTATTCGAGGGGAGAGCTTGATAGCTTTCAAGTCAATCATCTTGGCTTGGCTATCCACTCTCTAGCTGAAGTGATGGACATAAGGCGTGGCATTGTCATGCCCTCAAAATGGGTTGCAGCAGTAGATAACTGCTGCCACCTCAAAGTCTGA 1092 0.467 MAMNTVCLKDHDGIAHNSIGQLSSVTSAPWWSSFGSQLGYGDSCNHTKSFSLELPNCGDQFTATKTAGRDGEQGTDKGNTTHFAIFPVNNPGEVYVTKHYMGHGDAQKPNSTISLQSSVPDHRARFELGFGQPMVCGKYPYVDQYYGLFSAYGPQFSGRIMLPLNLTTDDGPIYVNAKQYHGIIRRRQSRAKAELENKLTKARKPYMHESRHRHAMRRPRGSGGRFLNTKSLDGGKSTNEANGIGGGKTMHPAGLHHAVVQSGRAGNRTVDRQALQPTGSHSSEFQQSDGGTINSSKDTNGSNSNISGSEVTSMYSRGELDSFQVNHLGLAIHSLAEVMDIRRGIVMPSKWVAAVDNCCHLKV* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00725 363 SMART cbf3 168 229 IPR001289 GO:0003700|GO:0006355
Pte13g00725 363 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 45 316 IPR001289 GO:0003700|GO:0006355
Pte13g00725 363 MobiDBLite consensus disorder prediction 207 252 - -
Pte13g00725 363 ProSiteProfiles NF-YA/HAP2 family profile. 169 229 IPR001289 GO:0003700|GO:0006355
Pte13g00725 363 MobiDBLite consensus disorder prediction 274 310 - -
Pte13g00725 363 Gene3D - 169 231 - -
Pte13g00725 363 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 172 226 IPR001289 GO:0003700|GO:0006355
Pte13g00725 363 PRINTS CCAAT-binding transcription factor subunit B signature 172 194 IPR001289 GO:0003700|GO:0006355
Pte13g00725 363 PRINTS CCAAT-binding transcription factor subunit B signature 203 226 IPR001289 GO:0003700|GO:0006355
Pte13g00725 363 ProSitePatterns NF-YA/HAP2 subunit signature. 174 194 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00725 Pte-Chr13 5898978 5904037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00725 22 364 CCAAT-HAP2 Transcription Factor Family AT3G05690 41.504 1.12e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pte13g00725 CBFB_NFYA 3.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00725 K08064 - qsa:O6P43_009681 466.077