Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00724 ATGTCTGCCACAGCTACAGCCTCCTATTCAATCTGCAACAGAATCTATAATATCTCCTTAACTCACTACTCCATTTCTATCCCAGCCAACTTCCCACATAGACATTCTCCCAAACCCCTCAAACTATGCCTGAAACACCAACCATGCACTTCCTCTGTTCTTGTCTTTCTCTCACATGTTCGTGTAGCATGTTCCACTTCAGATGGCGCTGAAGCTGCACAAGAAGTGGAACCACGTCAAGAACAACCAGAACGAGAAAAGGAGGGGCAGGAACTCCCGTGGGATTCAGATGAGGAGAAGAGGCTTTACGTGGGAAACTTGCCGTTTTCCATGACTTCTTACGAGTTGACTAAGCTTTTTGAAGAGGCTGGCTCTGTGAAATCTGCGGAAATAGTATATGATCGAGTTACGGATAGAAGCAGAGGTTTTGGCTTTGTGACAATGGCAAGTGTTGAGGATGCCAAAAAAGCAATCCTAATGTTTGATGGCTCGCAAGTGGGAGGTCGGACTGCCAAGGTTAATTTTCCAGAAGTCCCTAGAGGAAAAGAAAGGTTGGTGATGGGGCCGAGAGCACGGAACAGCAACAGCAACAGCGGTGGCTTTATAGACAGTAATTACAAGATTTACGCTGGAAACCTTGGTTGGCGTGTAACATCCCAGGATCTTAGAGATGCTTTTGCTGATCTGCCAGGAGTATTGAGTGCCAAAGTGGTGTATGAGAAGGACTCAAGGAGGTCTAGAGGCTTTGGATTCGTCTCTTTCGAAAATGCAGAAGCTGTAGAAGCAGCTTTACGGGCCAAGAATGGAATGGAGCTGGAAGGACGGCCTTTGAGATTGAATGTGGCTGTAGACAAGATTGCTTTTCAATCTCAGCCGGCATTTGGAGAAGACACACGGGACGACAGTCCCGCAAGCAATGAGTTACTTTCCAGCTATAGCACATGA 945 0.4677 MSATATASYSICNRIYNISLTHYSISIPANFPHRHSPKPLKLCLKHQPCTSSVLVFLSHVRVACSTSDGAEAAQEVEPRQEQPEREKEGQELPWDSDEEKRLYVGNLPFSMTSYELTKLFEEAGSVKSAEIVYDRVTDRSRGFGFVTMASVEDAKKAILMFDGSQVGGRTAKVNFPEVPRGKERLVMGPRARNSNSNSGGFIDSNYKIYAGNLGWRVTSQDLRDAFADLPGVLSAKVVYEKDSRRSRGFGFVSFENAEAVEAALRAKNGMELEGRPLRLNVAVDKIAFQSQPAFGEDTRDDSPASNELLSSYST* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00724 314 MobiDBLite consensus disorder prediction 74 95 - -
Pte13g00724 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 278 IPR000504 GO:0003723
Pte13g00724 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pte13g00724 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Pte13g00724 314 PANTHER OS02G0815200 PROTEIN 42 285 - -
Pte13g00724 314 Gene3D - 185 289 IPR012677 -
Pte13g00724 314 Gene3D - 61 184 IPR012677 -
Pte13g00724 314 CDD RRM2_NsCP33_like 207 282 - -
Pte13g00724 314 MobiDBLite consensus disorder prediction 68 95 - -
Pte13g00724 314 SMART rrm1_1 207 280 IPR000504 GO:0003723
Pte13g00724 314 SMART rrm1_1 101 174 IPR000504 GO:0003723
Pte13g00724 314 SUPERFAMILY RNA-binding domain, RBD 195 293 IPR035979 GO:0003676
Pte13g00724 314 CDD RRM1_PSRP2_like 101 180 - -
Pte13g00724 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Pte13g00724 314 SUPERFAMILY RNA-binding domain, RBD 93 201 IPR035979 GO:0003676
Pte13g00724 314 MobiDBLite consensus disorder prediction 292 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00724 Pte-Chr13 5896078 5897938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00724 102 292 Eukaryotic Initiation Factors Gene Family AT3G16380 32.857 2.38e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00724 - - qsa:O6P43_009680 356.295