Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00723 ATGAATGACTTGTTCAATTCAGTTTCATTTGCTCGCTCTCGAAACGACCAGGTTTCGCCGGACACACATCACCATGTCATCCAAATGACACCCACCACCTTAGATGCTGCTGCTAATCTTGACAAGTTCTTCGAGGAGGTAGAGCCTGTCAAACAAGAGCTCAAGGAGCTTGAAGGGCTTTATGAGAGCCTGTCTAACTCTCATGAGAAGAGCAAGACTCTTCACCATGCTAAGGCTGTTAAGGACCTCAGGGCTCTTATGCACAACGATATTACCATGGCTCTAAAGAAAGCTAAGCAGATCAAGGTCCGGTTGGAAGCTCTCGACCGTTCTAATGCTACCAGCAGGAACTTGCCCGGATGTGGACCCGGGTCGTCGTCGGACCGGACGAGGACTTCGGTTGTGAATGGGTTAAGGAATAAGCTGAAGGACTTCATGGACGGCTTCAATAGCTTGAGGCAAAAGATATCTTCTGAGTACAGAGAGACCGTACAGCGTAGGTATTACACAGTAACAGGCGAGAACCCTGATGAGAAGACTGTTGACAGTTTGATCTCCACCGGTGAGAGTGAAACTTTCTTGCAGAAGGCCATCGAGCAGCAAGGAAGAGCTAGCATTTTGGACACAATAAATGAAATTCGAGAGCGACATGATGCAGTGCAAGATATAGAGAGAAACCTTATGGAACTACACCAAGTATTCCTAGACATGGCAGTGTTGGTTCAAGCTCAAGGCGAACAATTGAATAACATTGAGAACAACCTGGAAAAAGCTGACTCGTTTGTAAATCGCGGAGTCCAGCAACTGCAGACAGCAAGACGGCACCAGAAAAACAGTCGGAAATGGACATGCTATGGCATCATACTTCTGCTGATTATCATCTTGGTGATTGTTCTTCCAATTGTCCTAAGAAAATAA 918 0.4619 MNDLFNSVSFARSRNDQVSPDTHHHVIQMTPTTLDAAANLDKFFEEVEPVKQELKELEGLYESLSNSHEKSKTLHHAKAVKDLRALMHNDITMALKKAKQIKVRLEALDRSNATSRNLPGCGPGSSSDRTRTSVVNGLRNKLKDFMDGFNSLRQKISSEYRETVQRRYYTVTGENPDEKTVDSLISTGESETFLQKAIEQQGRASILDTINEIRERHDAVQDIERNLMELHQVFLDMAVLVQAQGEQLNNIENNLEKADSFVNRGVQQLQTARRHQKNSRKWTCYGIILLLIIILVIVLPIVLRK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00723 305 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte13g00723 305 Pfam SNARE domain 246 298 IPR000727 -
Pte13g00723 305 SUPERFAMILY t-snare proteins 39 265 IPR010989 GO:0016020|GO:0016192
Pte13g00723 305 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Pte13g00723 305 PANTHER SYNTAXIN 43 295 IPR045242 -
Pte13g00723 305 CDD SynN 40 197 IPR006011 GO:0016020
Pte13g00723 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 37 167 - -
Pte13g00723 305 CDD SNARE_syntaxin1-like 209 271 - -
Pte13g00723 305 Gene3D - 199 303 - -
Pte13g00723 305 SMART SynN_4 35 161 IPR006011 GO:0016020
Pte13g00723 305 FunFam Syntaxin 132 203 303 - -
Pte13g00723 305 SMART tSNARE_6 205 272 IPR000727 -
Pte13g00723 305 Gene3D - 34 165 - -
Pte13g00723 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00723 Pte-Chr13 5894033 5895577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00723 31 284 SNARE and Associated Proteins AT3G11820 71.654 4.47e-133 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00723 K08486 - rcu:8259763 421.394