Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00722 ATGAATGACTTGTTTTCCGGCTCATTTTCTCGCTTCGGCAGCCAGCGAGCCTCGCCGGCACATAATGATATCGAGATGGGAACAGCGGCTCCGGCAGGAGTCAATCTGGATAAGTTCTTTCAGGATGTTGAATCCGTCAAGGAAGAATTGAGTGAGCTTGAACGGCTGAATGAGAGTTTGCGGAGCTCTCATGAAAAGAGCAAGACCCTTCATAATGCTAAAGCTGTTAAGGATCTCAGGCTTCGTATGGACAACGATGTGGCTCTCGCGCTTAAGAAAGCTAAGGTGATCAAGGTTCGATTGGAAGCATTGGATCGATCCAACGCTGCTAATCGGAGTTTACCTGATTGTGGACCTGGCTCGTCGTCCGACCGTACTCGGACGTCCGTAGTCAATGGTTTGAGGAAGAAGCTCAAGGATTCCATGGAGAGTTTCAACAATCTGAGGCAACAGATTTCCTCGGAGTACAGAGAGACCGTACAACGCAGGTATTTCACTGTCACTGGAGAAAATCCCGATGAGGATACCCTTGACAGGTTGATCTCCAATGGTGAAAGTGAGACATTCTTGCAGAAAGCCATACAAGAGCAAGGTAGAGGAAGAATATTAGACACGATCAATGAGATCCAAGAGAGGCATGATGCTGTGAAAGAGATAGAGAAAAATCTTCAGGAGTTGCATCAAGTGTTCCTTGACATGGCAGTGTTGGTGCAAGCTCAAGGTGAGCAGCTGGATAACATAGAAAACCATGTGGCAAGAGCCAACTCCTATGTGAAGACTGGAACTGAGCAATTAGTTGTGGCAAGGAAACACCAGAAAAATTCAAGGAAATGGGCATGTTATGGTATTATACTCCTTCTGGTCATCATCTTATTTGTGGTGCTTTTCACGGTGAAACCATGGCAACACAAAAGTGGTGGTGGAGGCAGTAGCAGCAGGAATGCACCTGCAATTCAGACGCAAACCCCTCCACCTCCTCCACCTACTCAACGATAG 996 0.4699 MNDLFSGSFSRFGSQRASPAHNDIEMGTAAPAGVNLDKFFQDVESVKEELSELERLNESLRSSHEKSKTLHNAKAVKDLRLRMDNDVALALKKAKVIKVRLEALDRSNAANRSLPDCGPGSSSDRTRTSVVNGLRKKLKDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEDTLDRLISNGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLQELHQVFLDMAVLVQAQGEQLDNIENHVARANSYVKTGTEQLVVARKHQKNSRKWACYGIILLLVIILFVVLFTVKPWQHKSGGGGSSSRNAPAIQTQTPPPPPPTQR* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00722 331 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Pte13g00722 331 SMART SynN_4 31 157 IPR006011 GO:0016020
Pte13g00722 331 Pfam SNARE domain 242 294 IPR000727 -
Pte13g00722 331 Gene3D - 203 299 - -
Pte13g00722 331 Coils Coil 131 155 - -
Pte13g00722 331 Coils Coil 206 226 - -
Pte13g00722 331 Coils Coil 36 66 - -
Pte13g00722 331 FunFam Syntaxin 132 199 299 - -
Pte13g00722 331 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 33 163 - -
Pte13g00722 331 SMART tSNARE_6 201 268 IPR000727 -
Pte13g00722 331 CDD SynN 36 193 IPR006011 GO:0016020
Pte13g00722 331 PANTHER SYNTAXIN 48 290 IPR045242 -
Pte13g00722 331 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte13g00722 331 CDD SNARE_syntaxin1-like 205 266 - -
Pte13g00722 331 MobiDBLite consensus disorder prediction 110 129 - -
Pte13g00722 331 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Pte13g00722 331 SUPERFAMILY t-snare proteins 34 261 IPR010989 GO:0016020|GO:0016192
Pte13g00722 331 MobiDBLite consensus disorder prediction 114 129 - -
Pte13g00722 331 MobiDBLite consensus disorder prediction 305 331 - -
Pte13g00722 331 Gene3D - 34 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00722 Pte-Chr13 5888582 5890491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00722 29 331 SNARE and Associated Proteins AT3G11820 73.290 3.75e-152 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00722 K08486 - jre:108982862 454.907